Variant report

Variant	rs4747580
Chromosome Location	chr10:27268185-27268186
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10741125	1.00[CHB][hapmap]
rs10764662	1.00[CHB][hapmap]
rs10829150	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10829164	1.00[CHB][hapmap]
rs10829165	1.00[CHB][hapmap]
rs10829168	1.00[CHB][hapmap]
rs11015395	1.00[CHB][hapmap]
rs11015402	1.00[CHB][hapmap]
rs11015403	1.00[CHB][hapmap]
rs11015404	1.00[CHB][hapmap]
rs11015439	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11015463	1.00[CHB][hapmap]
rs11527776	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12415390	1.00[YRI][hapmap]
rs1573141	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2012657	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2183335	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4237380	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4237381	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6415983	1.00[CHB][hapmap]
rs7071525	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7094511	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs788209	1.00[CHB][hapmap]
rs788221	1.00[CHB][hapmap]
rs7902540	1.00[CHB][hapmap]
rs7914382	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27243000-27294800	Weak transcription	Liver	Liver
2	chr10:27244800-27271800	Weak transcription	Pancreas	Pancrea
3	chr10:27245600-27270200	Weak transcription	Ovary	ovary
4	chr10:27246000-27269200	Weak transcription	Adipose Nuclei	Adipose
5	chr10:27246600-27273000	Weak transcription	Fetal Stomach	stomach
6	chr10:27247600-27269200	Weak transcription	Spleen	Spleen
7	chr10:27247800-27269200	Weak transcription	Lung	lung
8	chr10:27249600-27268600	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr10:27249800-27271400	Weak transcription	Right Ventricle	heart
10	chr10:27251600-27290000	Weak transcription	Fetal Intestine Large	intestine
11	chr10:27253400-27286400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr10:27253600-27269000	Weak transcription	Primary T cells from cord blood	blood
13	chr10:27254000-27271600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr10:27255400-27286800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr10:27255600-27282600	Weak transcription	Brain Anterior Caudate	brain
16	chr10:27257600-27319000	Weak transcription	Stomach Smooth Muscle	stomach
17	chr10:27258200-27291200	Weak transcription	Left Ventricle	heart
18	chr10:27258400-27290000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr10:27258600-27269800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr10:27258600-27272800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr10:27264000-27271200	Weak transcription	Aorta	Aorta
22	chr10:27265600-27269000	Strong transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links