Variant report

Variant	rs1573141
Chromosome Location	chr10:27268917-27268918
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANKRD26-1	chr10:27268231-27270936	NONHSAT011877

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10829150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11015439	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11527776	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12413932	0.97[ASN][1000 genomes]
rs12415376	0.98[ASN][1000 genomes]
rs12415390	0.97[ASN][1000 genomes]
rs12416563	0.97[ASN][1000 genomes]
rs12570454	0.97[ASN][1000 genomes]
rs12571317	0.97[ASN][1000 genomes]
rs12571809	0.97[ASN][1000 genomes]
rs12572539	0.97[ASN][1000 genomes]
rs1854645	0.97[ASN][1000 genomes]
rs2012657	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2183335	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3740229	0.93[ASN][1000 genomes]
rs4237380	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4747580	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56331929	0.97[ASN][1000 genomes]
rs58885200	0.96[ASN][1000 genomes]
rs59082004	0.97[ASN][1000 genomes]
rs61443189	0.97[ASN][1000 genomes]
rs7071525	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7094511	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs74128510	0.97[ASN][1000 genomes]
rs74128511	0.97[ASN][1000 genomes]
rs74128512	0.96[ASN][1000 genomes]
rs74128513	0.97[ASN][1000 genomes]
rs74128517	0.97[ASN][1000 genomes]
rs74128519	0.97[ASN][1000 genomes]
rs74128521	0.97[ASN][1000 genomes]
rs74128522	0.97[ASN][1000 genomes]
rs7914382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27243000-27294800	Weak transcription	Liver	Liver
2	chr10:27244800-27271800	Weak transcription	Pancreas	Pancrea
3	chr10:27245600-27270200	Weak transcription	Ovary	ovary
4	chr10:27246000-27269200	Weak transcription	Adipose Nuclei	Adipose
5	chr10:27246600-27273000	Weak transcription	Fetal Stomach	stomach
6	chr10:27247600-27269200	Weak transcription	Spleen	Spleen
7	chr10:27247800-27269200	Weak transcription	Lung	lung
8	chr10:27249800-27271400	Weak transcription	Right Ventricle	heart
9	chr10:27251600-27290000	Weak transcription	Fetal Intestine Large	intestine
10	chr10:27253400-27286400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr10:27253600-27269000	Weak transcription	Primary T cells from cord blood	blood
12	chr10:27254000-27271600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr10:27255400-27286800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr10:27255600-27282600	Weak transcription	Brain Anterior Caudate	brain
15	chr10:27257600-27319000	Weak transcription	Stomach Smooth Muscle	stomach
16	chr10:27258200-27291200	Weak transcription	Left Ventricle	heart
17	chr10:27258400-27290000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr10:27258600-27269800	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr10:27258600-27272800	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr10:27264000-27271200	Weak transcription	Aorta	Aorta
21	chr10:27265600-27269000	Strong transcription	Skeletal Muscle Female	skeletal muscle
22	chr10:27268600-27271200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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