Variant report

Variant	rs12572539
Chromosome Location	chr10:27282378-27282379
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27279898..27282608-chr10:27294339..27295905,2	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10829150	0.98[ASN][1000 genomes]
rs11015368	0.89[EUR][1000 genomes]
rs11015369	0.89[EUR][1000 genomes]
rs11015401	0.89[EUR][1000 genomes]
rs11015447	0.84[CHB][hapmap];0.94[JPT][hapmap];1.00[EUR][1000 genomes]
rs11015449	0.84[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11015546	0.84[CHB][hapmap];0.83[JPT][hapmap]
rs12412194	0.89[EUR][1000 genomes]
rs12413932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12414273	1.00[AMR][1000 genomes]
rs12415181	0.87[EUR][1000 genomes]
rs12415376	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12415390	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12416077	0.84[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12416080	0.83[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12416351	0.87[EUR][1000 genomes]
rs12416563	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12570065	0.84[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12570454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12570637	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12571068	0.87[EUR][1000 genomes]
rs12571317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12571529	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs12571754	0.89[EUR][1000 genomes]
rs12571809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12571996	0.87[EUR][1000 genomes]
rs12572302	0.84[CHB][hapmap];0.88[JPT][hapmap]
rs12572707	0.84[CHB][hapmap];0.88[JPT][hapmap]
rs12572862	0.84[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12573268	1.00[AMR][1000 genomes]
rs12573419	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1329993	0.84[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes]
rs1573141	0.97[ASN][1000 genomes]
rs1854645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2183335	0.97[ASN][1000 genomes]
rs2297144	0.90[CHB][hapmap];0.92[JPT][hapmap];1.00[AMR][1000 genomes]
rs34704508	1.00[AMR][1000 genomes]
rs34873765	1.00[AMR][1000 genomes]
rs3740229	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3780924	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs3781096	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3781101	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs3781102	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs3802526	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs3818633	0.83[CHB][hapmap];0.94[JPT][hapmap]
rs3824687	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3824690	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4255447	0.89[EUR][1000 genomes]
rs4747586	0.84[CHB][hapmap];0.88[JPT][hapmap]
rs4749222	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs4749229	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs4749234	0.84[CHB][hapmap]
rs56331929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58885200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59082004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61443189	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071525	0.98[ASN][1000 genomes]
rs74128510	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74128511	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74128512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs74128513	1.00[ASN][1000 genomes]
rs74128517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74128519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74128521	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74128522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74128524	1.00[EUR][1000 genomes]
rs7914382	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3365642	chr10:27274319-27283413	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27243000-27294800	Weak transcription	Liver	Liver
2	chr10:27251600-27290000	Weak transcription	Fetal Intestine Large	intestine
3	chr10:27253400-27286400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr10:27255400-27286800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr10:27255600-27282600	Weak transcription	Brain Anterior Caudate	brain
6	chr10:27257600-27319000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr10:27258200-27291200	Weak transcription	Left Ventricle	heart
8	chr10:27258400-27290000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr10:27269000-27293400	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr10:27270400-27291000	Weak transcription	Adipose Nuclei	Adipose
11	chr10:27273200-27290000	Weak transcription	Primary T cells from cord blood	blood
12	chr10:27277000-27284000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:27277000-27291000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr10:27277800-27290200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr10:27278600-27309200	Weak transcription	HSMM	muscle
16	chr10:27278800-27286600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr10:27279800-27286200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr10:27280600-27295000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr10:27280800-27282600	Weak transcription	Psoas Muscle	Psoas
20	chr10:27280800-27290800	Weak transcription	Ovary	ovary
21	chr10:27281400-27286200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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