Variant report

Variant	rs12571996
Chromosome Location	chr10:27180486-27180487
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs11015447	0.87[EUR][1000 genomes]
rs11015449	0.87[EUR][1000 genomes]
rs12413932	0.87[EUR][1000 genomes]
rs12415181	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12415376	0.87[EUR][1000 genomes]
rs12415390	0.87[EUR][1000 genomes]
rs12416077	0.87[EUR][1000 genomes]
rs12416080	0.87[EUR][1000 genomes]
rs12416351	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12416563	0.87[EUR][1000 genomes]
rs12570065	0.87[EUR][1000 genomes]
rs12570454	0.87[EUR][1000 genomes]
rs12570637	0.87[EUR][1000 genomes]
rs12571068	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12571317	0.87[EUR][1000 genomes]
rs12571809	0.87[EUR][1000 genomes]
rs12572166	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12572539	0.87[EUR][1000 genomes]
rs12572862	0.87[EUR][1000 genomes]
rs12573268	0.87[EUR][1000 genomes]
rs12573419	0.87[EUR][1000 genomes]
rs17754383	0.87[EUR][1000 genomes]
rs17754431	0.87[EUR][1000 genomes]
rs17816804	0.87[EUR][1000 genomes]
rs1854645	0.87[EUR][1000 genomes]
rs2296544	0.87[EUR][1000 genomes]
rs3740229	0.87[EUR][1000 genomes]
rs3781096	0.87[EUR][1000 genomes]
rs3802611	0.87[EUR][1000 genomes]
rs3824687	0.87[EUR][1000 genomes]
rs3824690	0.87[EUR][1000 genomes]
rs4628582	0.87[EUR][1000 genomes]
rs56331929	0.87[EUR][1000 genomes]
rs58885200	0.87[EUR][1000 genomes]
rs59082004	0.87[EUR][1000 genomes]
rs61443189	0.87[EUR][1000 genomes]
rs72629715	0.87[EUR][1000 genomes]
rs72629716	0.87[EUR][1000 genomes]
rs72629718	0.87[EUR][1000 genomes]
rs72629719	0.87[EUR][1000 genomes]
rs72629720	0.87[EUR][1000 genomes]
rs72629721	0.87[EUR][1000 genomes]
rs72629722	0.87[EUR][1000 genomes]
rs72629723	0.87[EUR][1000 genomes]
rs72629729	0.87[EUR][1000 genomes]
rs72629735	0.87[EUR][1000 genomes]
rs72629736	0.87[EUR][1000 genomes]
rs72629737	0.87[EUR][1000 genomes]
rs72629739	0.87[EUR][1000 genomes]
rs72629740	0.87[EUR][1000 genomes]
rs72629742	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72629743	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72629744	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72629745	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72629746	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72629747	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72629748	0.92[ASN][1000 genomes]
rs72629749	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72629750	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74128510	0.87[EUR][1000 genomes]
rs74128511	0.87[EUR][1000 genomes]
rs74128512	0.87[EUR][1000 genomes]
rs74128517	0.87[EUR][1000 genomes]
rs74128519	0.87[EUR][1000 genomes]
rs74128521	0.87[EUR][1000 genomes]
rs74128522	0.87[EUR][1000 genomes]
rs74128524	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831812	chr10:27061506-27234267	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2757376	chr10:27160932-27229993	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2759740	chr10:27160932-27229993	Strong transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv430140	chr10:27165095-27227681	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv2752390	chr10:27165095-27241780	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv947782	chr10:27172780-27189930	Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27170800-27183200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:27171400-27181600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:27180400-27182400	Enhancers	Primary B cells from peripheral blood	blood
4	chr10:27180400-27183400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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