Variant report

Variant	rs3824690
Chromosome Location	chr10:27318630-27318631
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs11015368	0.89[EUR][1000 genomes]
rs11015369	0.89[EUR][1000 genomes]
rs11015401	0.89[EUR][1000 genomes]
rs11015447	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015449	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015546	1.00[AFR][1000 genomes]
rs12411984	1.00[AFR][1000 genomes]
rs12412194	0.89[EUR][1000 genomes]
rs12413932	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12414273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12415181	0.87[EUR][1000 genomes]
rs12415376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12415390	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12416077	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12416080	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12416351	0.87[EUR][1000 genomes]
rs12416563	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12569491	1.00[AFR][1000 genomes]
rs12569598	1.00[AFR][1000 genomes]
rs12570065	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12570454	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12570637	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12570662	1.00[AFR][1000 genomes]
rs12571068	0.87[EUR][1000 genomes]
rs12571317	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12571529	1.00[AFR][1000 genomes]
rs12571754	0.89[EUR][1000 genomes]
rs12571809	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12571996	0.87[EUR][1000 genomes]
rs12572302	1.00[AFR][1000 genomes]
rs12572325	1.00[AFR][1000 genomes]
rs12572539	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12572862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12573268	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12573419	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1329993	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1854645	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2297144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs34704508	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs34873765	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3740229	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3780924	1.00[AFR][1000 genomes]
rs3780925	1.00[AFR][1000 genomes]
rs3781096	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3781101	1.00[AFR][1000 genomes]
rs3818633	1.00[AFR][1000 genomes]
rs3824687	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4255447	0.89[EUR][1000 genomes]
rs4747586	1.00[AFR][1000 genomes]
rs4749227	1.00[AFR][1000 genomes]
rs4749229	1.00[AFR][1000 genomes]
rs4749234	1.00[AFR][1000 genomes]
rs56331929	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58885200	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59082004	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61443189	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74128510	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74128511	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74128512	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74128517	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74128519	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74128521	1.00[EUR][1000 genomes]
rs74128522	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74128524	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27257600-27319000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:27283200-27388400	Weak transcription	Psoas Muscle	Psoas
3	chr10:27285000-27319200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr10:27285400-27319200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:27287000-27350600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr10:27287800-27350600	Weak transcription	Aorta	Aorta
7	chr10:27288400-27329400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:27288800-27357000	Weak transcription	Gastric	stomach
9	chr10:27289200-27361200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr10:27289600-27318800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr10:27289600-27360800	Weak transcription	Hela-S3	cervix
12	chr10:27289800-27360800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr10:27290200-27351400	Weak transcription	Thymus	Thymus
14	chr10:27290200-27361400	Weak transcription	Placenta	Placenta
15	chr10:27290800-27326800	Weak transcription	Osteobl	bone
16	chr10:27291200-27324000	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr10:27291400-27324000	Weak transcription	Brain Germinal Matrix	brain
18	chr10:27291400-27324200	Weak transcription	Primary hematopoietic stem cells	blood
19	chr10:27291400-27360600	Weak transcription	Lung	lung
20	chr10:27291600-27321200	Weak transcription	Fetal Intestine Small	intestine
21	chr10:27291600-27325200	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr10:27291600-27331200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr10:27291600-27351000	Weak transcription	NHLF	lung
24	chr10:27291600-27388000	Weak transcription	Small Intestine	intestine
25	chr10:27291800-27325600	Weak transcription	Primary B cells from cord blood	blood
26	chr10:27292000-27362200	Weak transcription	Fetal Brain Male	brain
27	chr10:27292200-27334800	Weak transcription	Colon Smooth Muscle	Colon
28	chr10:27293600-27340200	Weak transcription	A549	lung
29	chr10:27295400-27319000	Weak transcription	HepG2	liver
30	chr10:27295600-27319200	Weak transcription	Ovary	ovary
31	chr10:27295600-27328800	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr10:27295600-27345800	Weak transcription	Brain Angular Gyrus	brain
33	chr10:27298800-27328800	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr10:27302000-27319000	Weak transcription	Fetal Brain Female	brain
35	chr10:27303600-27361000	Weak transcription	Rectal Smooth Muscle	rectum
36	chr10:27304800-27329000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr10:27306000-27329200	Weak transcription	Fetal Muscle Leg	muscle
38	chr10:27306000-27360800	Weak transcription	Esophagus	oesophagus
39	chr10:27306800-27329600	Weak transcription	NHEK	skin
40	chr10:27307000-27320000	Weak transcription	NHDF-Ad	bronchial
41	chr10:27308800-27320000	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr10:27309000-27319200	Weak transcription	Pancreas	Pancrea
43	chr10:27309000-27319400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr10:27309000-27326000	Weak transcription	NH-A	brain
45	chr10:27309400-27334800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr10:27310000-27321000	Weak transcription	Fetal Stomach	stomach
47	chr10:27310200-27332000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr10:27310400-27332200	Weak transcription	Fetal Heart	heart
49	chr10:27310600-27329400	Weak transcription	HSMMtube	muscle
50	chr10:27311400-27320000	Weak transcription	Fetal Muscle Trunk	muscle

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