Variant report

Variant	rs12569598
Chromosome Location	chr10:27397490-27397491
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:27395462..27398841-chr10:27442023..27446304,5	K562	blood:
2	chr10:27396389..27398722-chr10:27411007..27413191,2	K562	blood:
3	chr10:27397434..27399225-chr10:27417185..27419169,2	K562	blood:

Variant related genes	Relation type
ENSG00000136758	Chromatin interaction
ENSG00000120539	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11015546	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12411984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12414273	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12415376	1.00[AFR][1000 genomes]
rs12569491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12570662	1.00[AFR][1000 genomes]
rs12571529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12572302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12572325	1.00[AFR][1000 genomes]
rs12572707	0.89[ASN][1000 genomes]
rs12572862	1.00[AFR][1000 genomes]
rs12573268	0.88[ASN][1000 genomes]
rs1329993	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2297144	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28365962	0.91[ASN][1000 genomes]
rs3758404	0.88[ASN][1000 genomes]
rs3780924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3780925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3781101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3781102	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3802526	0.89[ASN][1000 genomes]
rs3818633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3824592	0.91[ASN][1000 genomes]
rs3824690	1.00[AFR][1000 genomes]
rs4747586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4749222	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4749227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4749229	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4749234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73598035	0.91[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27389800-27399600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr10:27389800-27441200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:27390000-27398400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr10:27390000-27398600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr10:27390000-27398800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:27390000-27399200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr10:27390000-27400200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr10:27390000-27400200	Weak transcription	HMEC	breast
9	chr10:27390000-27400600	Weak transcription	NHLF	lung
10	chr10:27390000-27401200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr10:27390000-27406400	Weak transcription	Small Intestine	intestine
12	chr10:27390000-27408000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr10:27390000-27442000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr10:27390200-27398000	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr10:27390200-27398600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr10:27390200-27398600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr10:27390200-27399400	Weak transcription	HUVEC	blood vessel
18	chr10:27390200-27400000	Weak transcription	Lung	lung
19	chr10:27390200-27400400	Weak transcription	K562	blood
20	chr10:27390200-27401000	Weak transcription	Hela-S3	cervix
21	chr10:27390200-27401200	Weak transcription	Psoas Muscle	Psoas
22	chr10:27390200-27435000	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr10:27390400-27398600	Weak transcription	Brain Anterior Caudate	brain
24	chr10:27390400-27398600	Weak transcription	Brain Substantia Nigra	brain
25	chr10:27390400-27398600	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr10:27390400-27398800	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr10:27390400-27399200	Weak transcription	Duodenum Mucosa	Duodenum
28	chr10:27390400-27399800	Weak transcription	Pancreas	Pancrea
29	chr10:27390400-27399800	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr10:27390400-27400000	Weak transcription	Aorta	Aorta
31	chr10:27390400-27400000	Weak transcription	Colonic Mucosa	Colon
32	chr10:27390400-27400200	Weak transcription	Brain Hippocampus Middle	brain
33	chr10:27390400-27400600	Weak transcription	Brain Cingulate Gyrus	brain
34	chr10:27390400-27400600	Weak transcription	Colon Smooth Muscle	Colon
35	chr10:27390400-27400600	Weak transcription	Rectal Smooth Muscle	rectum
36	chr10:27390400-27400600	Weak transcription	NHEK	skin
37	chr10:27390400-27400800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr10:27390400-27400800	Weak transcription	Primary B cells from cord blood	blood
39	chr10:27390400-27401400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr10:27390400-27401400	Weak transcription	Esophagus	oesophagus
41	chr10:27390400-27401400	Weak transcription	Gastric	stomach
42	chr10:27390400-27401400	Weak transcription	Right Ventricle	heart
43	chr10:27390400-27417600	Weak transcription	Stomach Mucosa	stomach
44	chr10:27390600-27399000	Weak transcription	Placenta	Placenta
45	chr10:27390600-27399600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr10:27390600-27400200	Weak transcription	Fetal Brain Male	brain
47	chr10:27390600-27400600	Weak transcription	HepG2	liver
48	chr10:27390600-27400800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr10:27391200-27397600	Weak transcription	Fetal Thymus	thymus
50	chr10:27391200-27398600	Weak transcription	GM12878-XiMat	blood

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