Variant report

Variant	rs12569491
Chromosome Location	chr10:27419540-27419541
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:27418452..27420910-chr10:27431210..27433403,2	K562	blood:
2	chr10:27419218..27420848-chr10:27442327..27444441,2	MCF-7	breast:
3	chr10:27417369..27419676-chr10:27420734..27423204,2	MCF-7	breast:
4	chr10:27417994..27419718-chr10:27420292..27422809,2	K562	blood:

Variant related genes	Relation type
ENSG00000120539	Chromatin interaction
ENSG00000136758	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11015546	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12411984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12414273	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12415376	1.00[AFR][1000 genomes]
rs12569598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12570662	1.00[AFR][1000 genomes]
rs12571529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12572302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12572325	1.00[AFR][1000 genomes]
rs12572707	0.96[ASN][1000 genomes]
rs12572862	1.00[AFR][1000 genomes]
rs12573268	0.82[ASN][1000 genomes]
rs1329993	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2297144	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28365962	0.98[ASN][1000 genomes]
rs3758404	0.95[ASN][1000 genomes]
rs3780924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3780925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3781101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3781102	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3802526	0.96[ASN][1000 genomes]
rs3818633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3824592	0.98[ASN][1000 genomes]
rs3824690	1.00[AFR][1000 genomes]
rs4747586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4749222	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4749227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4749229	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4749234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73598035	0.98[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27389800-27441200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:27390000-27442000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:27390200-27435000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr10:27393800-27438600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:27394000-27426600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:27394200-27432600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:27394800-27432800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:27395400-27437800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:27396200-27425400	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr10:27396200-27440600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr10:27396600-27425400	Strong transcription	Fetal Muscle Trunk	muscle
12	chr10:27396800-27432000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr10:27397000-27425600	Strong transcription	HUES6 Cell Line	embryonic stem cell
14	chr10:27397600-27438600	Strong transcription	Fetal Thymus	thymus
15	chr10:27398200-27434200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr10:27398400-27428400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr10:27398400-27435200	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr10:27398600-27422000	Strong transcription	Rectal Mucosa Donor 31	rectum
19	chr10:27398600-27425000	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr10:27398600-27425200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr10:27398600-27425200	Strong transcription	Fetal Intestine Large	intestine
22	chr10:27398600-27425400	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr10:27398600-27426400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
24	chr10:27398600-27427000	Strong transcription	GM12878-XiMat	blood
25	chr10:27398600-27427800	Strong transcription	Adipose Nuclei	Adipose
26	chr10:27398600-27431600	Strong transcription	HUES48 Cell Line	embryonic stem cell
27	chr10:27398600-27434800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr10:27398600-27434800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
29	chr10:27398600-27434800	Strong transcription	Primary T helper cells PMA-I stimulated	--
30	chr10:27398600-27436400	Strong transcription	Dnd41	blood
31	chr10:27398800-27425400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr10:27398800-27426000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr10:27398800-27427600	Strong transcription	Fetal Lung	lung
34	chr10:27398800-27438200	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr10:27398800-27438200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr10:27399000-27426400	Strong transcription	Osteobl	bone
37	chr10:27399000-27426800	Strong transcription	Primary B cells from peripheral blood	blood
38	chr10:27399000-27431400	Strong transcription	Placenta	Placenta
39	chr10:27399200-27424800	Strong transcription	Cortex derived primary cultured neurospheres	brain
40	chr10:27399200-27425400	Strong transcription	Duodenum Mucosa	Duodenum
41	chr10:27399600-27435200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr10:27399600-27438400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr10:27399800-27438600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr10:27400000-27426000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr10:27400400-27438400	Strong transcription	Liver	Liver
46	chr10:27401200-27435400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr10:27401400-27425000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr10:27403000-27428400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr10:27403200-27431600	Strong transcription	NH-A	brain
50	chr10:27403600-27425200	Strong transcription	HepG2	liver

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