Variant report

Variant	rs4749227
Chromosome Location	chr10:27400388-27400389
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11015546	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11015630	0.87[EUR][1000 genomes]
rs11015632	0.87[EUR][1000 genomes]
rs12411697	0.87[EUR][1000 genomes]
rs12411984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12412003	0.87[EUR][1000 genomes]
rs12414273	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12415376	1.00[AFR][1000 genomes]
rs12569491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12569598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12570662	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12570850	0.87[EUR][1000 genomes]
rs12571235	0.87[EUR][1000 genomes]
rs12571529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12571606	0.87[EUR][1000 genomes]
rs12571758	0.87[EUR][1000 genomes]
rs12571873	0.87[EUR][1000 genomes]
rs12572302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12572325	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12572707	0.91[ASN][1000 genomes]
rs12572862	1.00[AFR][1000 genomes]
rs12573138	0.87[EUR][1000 genomes]
rs1329993	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2297144	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs28365962	0.94[ASN][1000 genomes]
rs34640469	0.87[EUR][1000 genomes]
rs34988171	0.87[EUR][1000 genomes]
rs3758404	0.97[ASN][1000 genomes]
rs3780924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3780925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3781101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3781102	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3802526	0.91[ASN][1000 genomes]
rs3818633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3824592	0.94[ASN][1000 genomes]
rs3824690	1.00[AFR][1000 genomes]
rs4747586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4749222	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4749229	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4749234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73598035	0.94[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27389800-27441200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:27390000-27400600	Weak transcription	NHLF	lung
3	chr10:27390000-27401200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr10:27390000-27406400	Weak transcription	Small Intestine	intestine
5	chr10:27390000-27408000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr10:27390000-27442000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:27390200-27400400	Weak transcription	K562	blood
8	chr10:27390200-27401000	Weak transcription	Hela-S3	cervix
9	chr10:27390200-27401200	Weak transcription	Psoas Muscle	Psoas
10	chr10:27390200-27435000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr10:27390400-27400600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr10:27390400-27400600	Weak transcription	Colon Smooth Muscle	Colon
13	chr10:27390400-27400600	Weak transcription	Rectal Smooth Muscle	rectum
14	chr10:27390400-27400600	Weak transcription	NHEK	skin
15	chr10:27390400-27400800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr10:27390400-27400800	Weak transcription	Primary B cells from cord blood	blood
17	chr10:27390400-27401400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr10:27390400-27401400	Weak transcription	Esophagus	oesophagus
19	chr10:27390400-27401400	Weak transcription	Gastric	stomach
20	chr10:27390400-27401400	Weak transcription	Right Ventricle	heart
21	chr10:27390400-27417600	Weak transcription	Stomach Mucosa	stomach
22	chr10:27390600-27400600	Weak transcription	HepG2	liver
23	chr10:27390600-27400800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr10:27393800-27438600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr10:27394000-27426600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr10:27394200-27400400	Weak transcription	Brain Germinal Matrix	brain
27	chr10:27394200-27432600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr10:27394400-27400400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr10:27394400-27400800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr10:27394400-27401400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr10:27394400-27403400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr10:27394600-27400600	Weak transcription	Brain Angular Gyrus	brain
33	chr10:27394600-27400800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr10:27394800-27400600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr10:27394800-27432800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr10:27395200-27400400	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr10:27395400-27437800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr10:27396200-27412800	Strong transcription	Duodenum Smooth Muscle	Duodenum
39	chr10:27396200-27425400	Strong transcription	Primary neutrophils fromperipheralblood	blood
40	chr10:27396200-27440600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr10:27396400-27418400	Strong transcription	Monocytes-CD14+_RO01746	blood
42	chr10:27396600-27401800	Strong transcription	Muscle Satellite Cultured Cells	--
43	chr10:27396600-27425400	Strong transcription	Fetal Muscle Trunk	muscle
44	chr10:27396800-27411800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr10:27396800-27432000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr10:27397000-27412600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr10:27397000-27425600	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr10:27397400-27400600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr10:27397400-27400600	Weak transcription	NHDF-Ad	bronchial
50	chr10:27397600-27438600	Strong transcription	Fetal Thymus	thymus

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