Variant report

Variant	rs12570850
Chromosome Location	chr10:27547444-27547445
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11015630	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11015632	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11015659	1.00[EUR][1000 genomes]
rs12411685	1.00[EUR][1000 genomes]
rs12411697	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12412003	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12412311	0.89[EUR][1000 genomes]
rs12570662	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12571235	1.00[EUR][1000 genomes]
rs12571257	1.00[EUR][1000 genomes]
rs12571606	1.00[EUR][1000 genomes]
rs12571758	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12571873	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12572237	0.89[EUR][1000 genomes]
rs12572325	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12573138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34640469	1.00[EUR][1000 genomes]
rs34988171	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4749227	0.87[EUR][1000 genomes]
rs4749234	1.00[EUR][1000 genomes]
rs56339647	1.00[EUR][1000 genomes]
rs59888463	1.00[EUR][1000 genomes]
rs7915661	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422253	chr10:27431366-27575370	Strong transcription Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3337781	chr10:27472216-27666703	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv8614	chr10:27504487-27828406	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27542000-27547600	Weak transcription	Pancreas	Pancrea
2	chr10:27546400-27547600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
3	chr10:27546400-27547600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:27546400-27547600	Bivalent Enhancer	Fetal Thymus	thymus
5	chr10:27546600-27547600	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
6	chr10:27546600-27547800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:27546600-27547800	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
8	chr10:27546600-27548600	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
9	chr10:27546800-27547600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
10	chr10:27546800-27547600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr10:27546800-27549000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
12	chr10:27547000-27547600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
13	chr10:27547000-27547600	Bivalent Enhancer	HepG2	liver
14	chr10:27547200-27547600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
15	chr10:27547200-27548000	Flanking Active TSS	Primary B cells from cord blood	blood
16	chr10:27547400-27547600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
17	chr10:27547400-27547600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr10:27547400-27547600	Active TSS	H9 Cell Line	embryonic stem cell
19	chr10:27547400-27547600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
20	chr10:27547400-27547600	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr10:27547400-27547600	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
22	chr10:27547400-27547600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
23	chr10:27547400-27547600	Flanking Bivalent TSS/Enh	Primary T killer memory cells from peripheral blood	blood
24	chr10:27547400-27547600	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr10:27547400-27547600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr10:27547400-27547600	Bivalent Enhancer	Liver	Liver
27	chr10:27547400-27547600	Flanking Bivalent TSS/Enh	Brain Angular Gyrus	brain
28	chr10:27547400-27547600	Bivalent/Poised TSS	Brain Germinal Matrix	brain
29	chr10:27547400-27547600	Active TSS	Brain Inferior Temporal Lobe	brain
30	chr10:27547400-27547600	Bivalent/Poised TSS	Colonic Mucosa	Colon
31	chr10:27547400-27547600	Flanking Active TSS	Fetal Heart	heart
32	chr10:27547400-27547600	Flanking Bivalent TSS/Enh	Fetal Kidney	kidney
33	chr10:27547400-27547600	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle
34	chr10:27547400-27547600	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
35	chr10:27547400-27547600	Bivalent/Poised TSS	Psoas Muscle	Psoas
36	chr10:27547400-27547600	Enhancers	Spleen	Spleen
37	chr10:27547400-27547600	Flanking Bivalent TSS/Enh	NHEK	skin
38	chr10:27547400-27547800	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr10:27547400-27547800	Bivalent Enhancer	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr10:27547400-27547800	Flanking Bivalent TSS/Enh	Primary T helper naive cells from peripheral blood	blood
41	chr10:27547400-27547800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
42	chr10:27547400-27547800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
43	chr10:27547400-27547800	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr10:27547400-27547800	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
45	chr10:27547400-27548000	Flanking Bivalent TSS/Enh	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr10:27547400-27548000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr10:27547400-27548000	Flanking Bivalent TSS/Enh	Brain Dorsolateral Prefrontal Cortex	brain
48	chr10:27547400-27548000	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
49	chr10:27547400-27548200	Flanking Bivalent TSS/Enh	Thymus	Thymus
50	chr10:27547400-27548200	Bivalent/Poised TSS	A549	lung

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