Variant report
| Variant | rs12573138 |
|---|---|
| Chromosome Location | chr10:27557120-27557121 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs11015630 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11015632 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11015659 | 1.00[EUR][1000 genomes] |
| rs12411685 | 1.00[EUR][1000 genomes] |
| rs12411697 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12412003 | 0.90[CHB][hapmap];0.93[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12412311 | 0.89[EUR][1000 genomes] |
| rs12570662 | 0.90[CHB][hapmap];0.89[CHD][hapmap];0.97[GIH][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12570850 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12571235 | 1.00[EUR][1000 genomes] |
| rs12571257 | 1.00[EUR][1000 genomes] |
| rs12571606 | 1.00[EUR][1000 genomes] |
| rs12571758 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12571873 | 1.00[EUR][1000 genomes] |
| rs12572237 | 0.89[EUR][1000 genomes] |
| rs12572325 | 1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.81[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs34640469 | 1.00[EUR][1000 genomes] |
| rs34988171 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4749227 | 0.87[EUR][1000 genomes] |
| rs4749234 | 1.00[EUR][1000 genomes] |
| rs56339647 | 1.00[EUR][1000 genomes] |
| rs59888463 | 1.00[EUR][1000 genomes] |
| rs7915661 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2422253 | chr10:27431366-27575370 | Strong transcription Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
| 2 | esv3337781 | chr10:27472216-27666703 | Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
| 3 | nsv8614 | chr10:27504487-27828406 | Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 34 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:27556400-27569400 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
