Variant report

Variant	rs12572862
Chromosome Location	chr10:27322303-27322304
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27314708..27316382-chr10:27319627..27322533,2	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs11015368	0.89[EUR][1000 genomes]
rs11015369	0.89[EUR][1000 genomes]
rs11015401	0.89[EUR][1000 genomes]
rs11015447	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015449	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015546	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[AFR][1000 genomes]
rs12411984	1.00[AFR][1000 genomes]
rs12412194	0.89[EUR][1000 genomes]
rs12413932	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12414273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12415181	0.87[EUR][1000 genomes]
rs12415376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12415390	0.84[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12416077	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12416080	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12416351	0.87[EUR][1000 genomes]
rs12416563	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12569491	1.00[AFR][1000 genomes]
rs12569598	1.00[AFR][1000 genomes]
rs12570065	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12570454	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12570637	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12570662	0.81[JPT][hapmap];1.00[AFR][1000 genomes]
rs12571068	0.87[EUR][1000 genomes]
rs12571317	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12571529	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes]
rs12571754	0.89[EUR][1000 genomes]
rs12571809	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12571996	0.87[EUR][1000 genomes]
rs12572302	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes]
rs12572325	1.00[AFR][1000 genomes]
rs12572539	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12572707	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs12573268	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12573419	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1329993	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1854645	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2297144	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs34704508	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs34873765	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3740229	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3780924	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes]
rs3780925	1.00[AFR][1000 genomes]
rs3781096	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3781101	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs3781102	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3802526	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs3818633	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs3824687	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3824690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4255447	0.89[EUR][1000 genomes]
rs4747586	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes]
rs4749222	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4749227	1.00[AFR][1000 genomes]
rs4749229	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes]
rs4749234	1.00[CHB][hapmap];1.00[AFR][1000 genomes]
rs56331929	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58885200	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59082004	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61443189	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74128510	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74128511	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74128512	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74128517	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74128519	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74128521	1.00[EUR][1000 genomes]
rs74128522	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74128524	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27283200-27388400	Weak transcription	Psoas Muscle	Psoas
2	chr10:27287000-27350600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr10:27287800-27350600	Weak transcription	Aorta	Aorta
4	chr10:27288400-27329400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:27288800-27357000	Weak transcription	Gastric	stomach
6	chr10:27289200-27361200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr10:27289600-27360800	Weak transcription	Hela-S3	cervix
8	chr10:27289800-27360800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr10:27290200-27351400	Weak transcription	Thymus	Thymus
10	chr10:27290200-27361400	Weak transcription	Placenta	Placenta
11	chr10:27290800-27326800	Weak transcription	Osteobl	bone
12	chr10:27291200-27324000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr10:27291400-27324000	Weak transcription	Brain Germinal Matrix	brain
14	chr10:27291400-27324200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr10:27291400-27360600	Weak transcription	Lung	lung
16	chr10:27291600-27325200	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr10:27291600-27331200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr10:27291600-27351000	Weak transcription	NHLF	lung
19	chr10:27291600-27388000	Weak transcription	Small Intestine	intestine
20	chr10:27291800-27325600	Weak transcription	Primary B cells from cord blood	blood
21	chr10:27292000-27362200	Weak transcription	Fetal Brain Male	brain
22	chr10:27292200-27334800	Weak transcription	Colon Smooth Muscle	Colon
23	chr10:27293600-27340200	Weak transcription	A549	lung
24	chr10:27295600-27328800	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr10:27295600-27345800	Weak transcription	Brain Angular Gyrus	brain
26	chr10:27298800-27328800	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr10:27303600-27361000	Weak transcription	Rectal Smooth Muscle	rectum
28	chr10:27304800-27329000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr10:27306000-27329200	Weak transcription	Fetal Muscle Leg	muscle
30	chr10:27306000-27360800	Weak transcription	Esophagus	oesophagus
31	chr10:27306800-27329600	Weak transcription	NHEK	skin
32	chr10:27309000-27326000	Weak transcription	NH-A	brain
33	chr10:27309400-27334800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr10:27310200-27332000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr10:27310400-27332200	Weak transcription	Fetal Heart	heart
36	chr10:27310600-27329400	Weak transcription	HSMMtube	muscle
37	chr10:27312400-27324000	Weak transcription	Fetal Thymus	thymus
38	chr10:27312600-27330200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr10:27312800-27324000	Weak transcription	Brain Hippocampus Middle	brain
40	chr10:27312800-27324000	Weak transcription	Brain Substantia Nigra	brain
41	chr10:27312800-27329200	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr10:27312800-27335200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr10:27312800-27358200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr10:27313000-27324000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr10:27313200-27324400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr10:27313200-27363400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr10:27313200-27388200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr10:27313200-27388600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr10:27313400-27388400	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr10:27313600-27325600	Weak transcription	HUVEC	blood vessel

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