Variant report

Variant	rs12416077
Chromosome Location	chr10:27289505-27289506
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27276414..27278401-chr10:27289394..27292379,2	K562	blood:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs11015368	0.89[EUR][1000 genomes]
rs11015369	0.89[EUR][1000 genomes]
rs11015401	0.89[EUR][1000 genomes]
rs11015447	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015449	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015546	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs12218581	1.00[YRI][hapmap]
rs12219637	1.00[YRI][hapmap]
rs12220671	1.00[YRI][hapmap]
rs12412194	0.89[EUR][1000 genomes]
rs12413932	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12414273	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12415181	0.87[EUR][1000 genomes]
rs12415376	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12415390	0.84[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12416080	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12416351	0.87[EUR][1000 genomes]
rs12416563	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12570065	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12570454	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12570637	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12571068	0.87[EUR][1000 genomes]
rs12571317	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12571529	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs12571754	0.89[EUR][1000 genomes]
rs12571809	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12571996	0.87[EUR][1000 genomes]
rs12572302	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs12572539	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12572707	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs12572726	1.00[YRI][hapmap]
rs12572862	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12573268	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12573419	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1329993	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1854645	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2297144	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs34704508	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs34873765	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3740229	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3780924	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs3781096	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3781101	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3781102	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs3802526	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs3818633	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3824687	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3824690	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3928123	1.00[YRI][hapmap]
rs4255447	0.89[EUR][1000 genomes]
rs4747586	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs4749201	1.00[YRI][hapmap]
rs4749222	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4749229	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs4749234	1.00[CHB][hapmap]
rs56331929	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58885200	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59082004	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61443189	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74128510	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74128511	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74128512	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74128517	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74128519	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74128521	1.00[EUR][1000 genomes]
rs74128522	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74128524	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27243000-27294800	Weak transcription	Liver	Liver
2	chr10:27251600-27290000	Weak transcription	Fetal Intestine Large	intestine
3	chr10:27257600-27319000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr10:27258200-27291200	Weak transcription	Left Ventricle	heart
5	chr10:27258400-27290000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr10:27269000-27293400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr10:27270400-27291000	Weak transcription	Adipose Nuclei	Adipose
8	chr10:27273200-27290000	Weak transcription	Primary T cells from cord blood	blood
9	chr10:27277000-27291000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr10:27277800-27290200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr10:27278600-27309200	Weak transcription	HSMM	muscle
12	chr10:27280600-27295000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr10:27280800-27290800	Weak transcription	Ovary	ovary
14	chr10:27283000-27291800	Weak transcription	Brain Anterior Caudate	brain
15	chr10:27283200-27388400	Weak transcription	Psoas Muscle	Psoas
16	chr10:27284400-27291400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:27284400-27292400	Weak transcription	NHDF-Ad	bronchial
18	chr10:27284400-27310400	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr10:27284800-27308800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr10:27285000-27319200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr10:27285400-27312000	Weak transcription	Brain Hippocampus Middle	brain
22	chr10:27285400-27319200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr10:27286200-27302600	Weak transcription	Fetal Heart	heart
24	chr10:27286400-27291000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr10:27286400-27310000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr10:27286400-27316600	Weak transcription	Duodenum Mucosa	Duodenum
27	chr10:27286600-27291000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr10:27286600-27311800	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr10:27286600-27312000	Weak transcription	Fetal Thymus	thymus
30	chr10:27286800-27290200	Weak transcription	Primary hematopoietic stem cells	blood
31	chr10:27286800-27293800	Weak transcription	HepG2	liver
32	chr10:27287000-27290800	Weak transcription	Fetal Stomach	stomach
33	chr10:27287000-27291000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr10:27287000-27308800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr10:27287000-27312000	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr10:27287000-27350600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr10:27287200-27297400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr10:27287400-27290400	Weak transcription	Fetal Muscle Leg	muscle
39	chr10:27287800-27310000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr10:27287800-27350600	Weak transcription	Aorta	Aorta
41	chr10:27288000-27290000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr10:27288200-27289800	Weak transcription	Fetal Lung	lung
43	chr10:27288200-27290200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr10:27288200-27290600	Weak transcription	Fetal Muscle Trunk	muscle
45	chr10:27288200-27292000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr10:27288400-27290200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr10:27288400-27329400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr10:27288600-27290200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr10:27288600-27290200	Weak transcription	Fetal Intestine Small	intestine
50	chr10:27288600-27312000	Weak transcription	Primary T helper cells PMA-I stimulated	--

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