Variant report

Variant	rs4749222
Chromosome Location	chr10:27363666-27363667
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11015447	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11015449	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11015546	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12218581	1.00[YRI][hapmap]
rs12219637	1.00[YRI][hapmap]
rs12220671	1.00[YRI][hapmap]
rs12411984	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12414273	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12415390	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs12416077	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12416080	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12569491	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12569598	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12570065	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12570662	0.81[JPT][hapmap]
rs12571529	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12572302	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12572707	1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs12572726	1.00[YRI][hapmap]
rs12572862	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12573268	0.91[ASN][1000 genomes]
rs12573419	0.81[ASN][1000 genomes]
rs1329993	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2297144	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28365962	0.86[ASN][1000 genomes]
rs3758404	0.83[ASN][1000 genomes]
rs3780924	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3780925	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3781101	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3781102	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3802526	1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs3818633	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3824592	0.86[ASN][1000 genomes]
rs3928123	1.00[YRI][hapmap]
rs4747586	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4749201	1.00[YRI][hapmap]
rs4749227	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4749229	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4749234	1.00[CHB][hapmap];1.00[AMR][1000 genomes]
rs73598035	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894979	chr10:27325119-27375411	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27283200-27388400	Weak transcription	Psoas Muscle	Psoas
2	chr10:27291600-27388000	Weak transcription	Small Intestine	intestine
3	chr10:27313200-27388200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr10:27313200-27388600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr10:27313400-27388400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr10:27314600-27388800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:27323400-27388600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr10:27326600-27366000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr10:27326800-27388200	Weak transcription	Brain Substantia Nigra	brain
10	chr10:27328000-27388200	Weak transcription	K562	blood
11	chr10:27330200-27381400	Weak transcription	HSMMtube	muscle
12	chr10:27333000-27384600	Weak transcription	Fetal Heart	heart
13	chr10:27341200-27365600	Weak transcription	HUVEC	blood vessel
14	chr10:27341400-27376600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr10:27342000-27367600	Weak transcription	Stomach Mucosa	stomach
16	chr10:27348600-27365600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr10:27350200-27364000	Weak transcription	NHDF-Ad	bronchial
18	chr10:27350200-27387800	Weak transcription	HMEC	breast
19	chr10:27351600-27366200	Weak transcription	HSMM	muscle
20	chr10:27351600-27366400	Weak transcription	NHLF	lung
21	chr10:27353000-27365800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr10:27356400-27363800	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr10:27356400-27366600	Strong transcription	Fetal Muscle Leg	muscle
24	chr10:27356400-27367000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr10:27357400-27364200	Strong transcription	Fetal Muscle Trunk	muscle
26	chr10:27358400-27366000	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr10:27358600-27388400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr10:27360400-27364600	Strong transcription	Brain Germinal Matrix	brain
29	chr10:27360400-27364600	Strong transcription	Fetal Intestine Large	intestine
30	chr10:27360400-27364800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr10:27360400-27364800	Strong transcription	Cortex derived primary cultured neurospheres	brain
32	chr10:27360400-27364800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr10:27360400-27366400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr10:27360400-27367400	Strong transcription	Primary B cells from peripheral blood	blood
35	chr10:27360400-27367400	Strong transcription	Fetal Thymus	thymus
36	chr10:27360400-27368600	Strong transcription	Liver	Liver
37	chr10:27360400-27378800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr10:27360400-27383800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr10:27360400-27384800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr10:27360600-27364600	Strong transcription	Primary T cells fromperipheralblood	blood
41	chr10:27360600-27364600	Strong transcription	Dnd41	blood
42	chr10:27360600-27366200	Strong transcription	Primary T cells from cord blood	blood
43	chr10:27360600-27366600	Strong transcription	Duodenum Smooth Muscle	Duodenum
44	chr10:27360600-27366800	Strong transcription	Duodenum Mucosa	Duodenum
45	chr10:27360600-27367400	Strong transcription	Primary B cells from cord blood	blood
46	chr10:27360600-27367800	Strong transcription	Rectal Mucosa Donor 31	rectum
47	chr10:27360600-27370400	Strong transcription	Rectal Mucosa Donor 29	rectum
48	chr10:27360600-27371600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr10:27360600-27372000	Strong transcription	Adipose Nuclei	Adipose
50	chr10:27360600-27384600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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