Variant report

Variant	rs11015449
Chromosome Location	chr10:27293615-27293616
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27293100..27295598-chr10:27302501..27304156,2	K562	blood:

Variant related genes	Relation type
ENSG00000107890	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs11015368	0.89[EUR][1000 genomes]
rs11015369	0.89[EUR][1000 genomes]
rs11015401	0.89[EUR][1000 genomes]
rs11015447	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015546	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs12218581	1.00[YRI][hapmap]
rs12219637	1.00[YRI][hapmap]
rs12220671	1.00[YRI][hapmap]
rs12412194	0.89[EUR][1000 genomes]
rs12413932	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12414273	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12415181	0.87[EUR][1000 genomes]
rs12415376	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12415390	0.84[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12416077	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12416080	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12416351	0.87[EUR][1000 genomes]
rs12416563	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12570065	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12570454	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12570637	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12571068	0.87[EUR][1000 genomes]
rs12571317	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12571529	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs12571754	0.89[EUR][1000 genomes]
rs12571809	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12571996	0.87[EUR][1000 genomes]
rs12572302	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs12572539	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12572707	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs12572726	1.00[YRI][hapmap]
rs12572862	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12573268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12573419	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1329993	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1854645	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2297144	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs34704508	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs34873765	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3740229	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3780924	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs3781096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3781101	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3781102	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs3802526	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs3818633	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3824687	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3824690	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3928123	1.00[YRI][hapmap]
rs4255447	0.89[EUR][1000 genomes]
rs4747586	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs4749201	1.00[YRI][hapmap]
rs4749222	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4749229	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs4749234	1.00[CHB][hapmap]
rs56331929	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58885200	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59082004	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61443189	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74128510	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74128511	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74128512	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74128517	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74128519	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74128521	1.00[EUR][1000 genomes]
rs74128522	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74128524	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27243000-27294800	Weak transcription	Liver	Liver
2	chr10:27257600-27319000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:27278600-27309200	Weak transcription	HSMM	muscle
4	chr10:27280600-27295000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:27283200-27388400	Weak transcription	Psoas Muscle	Psoas
6	chr10:27284400-27310400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr10:27284800-27308800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr10:27285000-27319200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr10:27285400-27312000	Weak transcription	Brain Hippocampus Middle	brain
10	chr10:27285400-27319200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:27286200-27302600	Weak transcription	Fetal Heart	heart
12	chr10:27286400-27310000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr10:27286400-27316600	Weak transcription	Duodenum Mucosa	Duodenum
14	chr10:27286600-27311800	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr10:27286600-27312000	Weak transcription	Fetal Thymus	thymus
16	chr10:27286800-27293800	Weak transcription	HepG2	liver
17	chr10:27287000-27308800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr10:27287000-27312000	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr10:27287000-27350600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr10:27287200-27297400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr10:27287800-27310000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr10:27287800-27350600	Weak transcription	Aorta	Aorta
23	chr10:27288400-27329400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr10:27288600-27312000	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr10:27288600-27312000	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr10:27288800-27295000	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr10:27288800-27298800	Weak transcription	GM12878-XiMat	blood
28	chr10:27288800-27357000	Weak transcription	Gastric	stomach
29	chr10:27289200-27296600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr10:27289200-27302400	Weak transcription	Right Ventricle	heart
31	chr10:27289200-27361200	Weak transcription	Brain Cingulate Gyrus	brain
32	chr10:27289600-27309800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr10:27289600-27310000	Weak transcription	HSMMtube	muscle
34	chr10:27289600-27312400	Weak transcription	Brain Substantia Nigra	brain
35	chr10:27289600-27314200	Weak transcription	Spleen	Spleen
36	chr10:27289600-27318800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr10:27289600-27360800	Weak transcription	Hela-S3	cervix
38	chr10:27289800-27295000	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr10:27289800-27296000	Weak transcription	Pancreas	Pancrea
40	chr10:27289800-27360800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr10:27290200-27294400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr10:27290200-27351400	Weak transcription	Thymus	Thymus
43	chr10:27290200-27361400	Weak transcription	Placenta	Placenta
44	chr10:27290400-27309600	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr10:27290600-27300400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr10:27290600-27310000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr10:27290600-27314800	Weak transcription	Fetal Kidney	kidney
48	chr10:27290800-27296200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr10:27290800-27326800	Weak transcription	Osteobl	bone
50	chr10:27291000-27310200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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