Variant report

Variant	rs1329993
Chromosome Location	chr10:27356958-27356959
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27353136..27355014-chr10:27355485..27358702,3	MCF-7	breast:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs11015447	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11015449	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11015546	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12218581	1.00[YRI][hapmap]
rs12219637	1.00[YRI][hapmap]
rs12220671	1.00[YRI][hapmap]
rs12411984	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12413932	1.00[AMR][1000 genomes]
rs12414273	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12415376	1.00[AMR][1000 genomes]
rs12415390	0.84[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes]
rs12416077	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12416080	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12416563	1.00[AMR][1000 genomes]
rs12569491	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12569598	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12570065	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12570454	1.00[AMR][1000 genomes]
rs12570637	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12570662	0.81[JPT][hapmap]
rs12571317	1.00[AMR][1000 genomes]
rs12571529	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12571809	1.00[AMR][1000 genomes]
rs12572302	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12572539	1.00[AMR][1000 genomes]
rs12572707	1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs12572726	1.00[YRI][hapmap]
rs12572862	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12573268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12573419	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1854645	1.00[AMR][1000 genomes]
rs2297144	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28365962	0.87[ASN][1000 genomes]
rs34704508	1.00[AMR][1000 genomes]
rs34873765	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3740229	1.00[AMR][1000 genomes]
rs3758404	0.84[ASN][1000 genomes]
rs3780924	1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs3780925	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3781096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3781101	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3781102	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3802526	1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs3818633	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3824592	0.87[ASN][1000 genomes]
rs3824687	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3824690	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3928123	1.00[YRI][hapmap]
rs4747586	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4749201	1.00[YRI][hapmap]
rs4749222	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4749227	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4749229	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4749234	1.00[CHB][hapmap]
rs56331929	1.00[AMR][1000 genomes]
rs58885200	1.00[AMR][1000 genomes]
rs59082004	1.00[AMR][1000 genomes]
rs61443189	1.00[AMR][1000 genomes]
rs73598035	0.87[ASN][1000 genomes]
rs74128510	1.00[AMR][1000 genomes]
rs74128511	1.00[AMR][1000 genomes]
rs74128512	1.00[AMR][1000 genomes]
rs74128517	1.00[AMR][1000 genomes]
rs74128519	1.00[AMR][1000 genomes]
rs74128522	1.00[AMR][1000 genomes]
rs74128524	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894979	chr10:27325119-27375411	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27283200-27388400	Weak transcription	Psoas Muscle	Psoas
2	chr10:27288800-27357000	Weak transcription	Gastric	stomach
3	chr10:27289200-27361200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr10:27289600-27360800	Weak transcription	Hela-S3	cervix
5	chr10:27289800-27360800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:27290200-27361400	Weak transcription	Placenta	Placenta
7	chr10:27291400-27360600	Weak transcription	Lung	lung
8	chr10:27291600-27388000	Weak transcription	Small Intestine	intestine
9	chr10:27292000-27362200	Weak transcription	Fetal Brain Male	brain
10	chr10:27303600-27361000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr10:27306000-27360800	Weak transcription	Esophagus	oesophagus
12	chr10:27312800-27358200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:27313200-27363400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr10:27313200-27388200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr10:27313200-27388600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr10:27313400-27388400	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr10:27314600-27388800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:27318200-27357400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr10:27319000-27360400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr10:27323400-27388600	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr10:27323600-27361800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr10:27326400-27360600	Weak transcription	Spleen	Spleen
23	chr10:27326600-27366000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr10:27326800-27388200	Weak transcription	Brain Substantia Nigra	brain
25	chr10:27327600-27360400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr10:27328000-27388200	Weak transcription	K562	blood
27	chr10:27329800-27360600	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr10:27330200-27381400	Weak transcription	HSMMtube	muscle
29	chr10:27330400-27360400	Weak transcription	NHEK	skin
30	chr10:27330400-27360600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr10:27330600-27360800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr10:27331400-27360600	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr10:27331800-27360600	Weak transcription	Pancreas	Pancrea
34	chr10:27332600-27360800	Weak transcription	Primary hematopoietic stem cells	blood
35	chr10:27333000-27360600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr10:27333000-27384600	Weak transcription	Fetal Heart	heart
37	chr10:27336200-27360600	Weak transcription	Colon Smooth Muscle	Colon
38	chr10:27338800-27357000	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr10:27341000-27363400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr10:27341200-27365600	Weak transcription	HUVEC	blood vessel
41	chr10:27341400-27376600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr10:27342000-27367600	Weak transcription	Stomach Mucosa	stomach
43	chr10:27345600-27358800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr10:27347600-27360800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr10:27347800-27357600	Strong transcription	Liver	Liver
46	chr10:27348000-27359600	Strong transcription	Fetal Intestine Large	intestine
47	chr10:27348600-27365600	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr10:27348800-27360400	Weak transcription	Colonic Mucosa	Colon
49	chr10:27349800-27360400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr10:27350000-27362400	Weak transcription	NH-A	brain

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