Variant report

Variant	rs3780925
Chromosome Location	chr10:27427818-27427819
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:27425881-27429350	K562	blood:	n/a	n/a
2	POLR2A	chr10:27424441-27430915	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:27415890..27418210-chr10:27426532..27429546,3	K562	blood:
2	chr10:27426913..27428893-chr10:27439764..27442698,2	MCF-7	breast:
3	chr10:27420918..27424983-chr10:27426068..27428303,5	K562	blood:
4	chr10:27424774..27426638-chr10:27427072..27429672,2	MCF-7	breast:

Variant related genes	Relation type
YME1L1	TF binding region
ENSG00000136758	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11015546	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12411984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12414273	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12415376	1.00[AFR][1000 genomes]
rs12569491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12569598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12570662	1.00[AFR][1000 genomes]
rs12571529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12572302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12572325	1.00[AFR][1000 genomes]
rs12572707	0.96[ASN][1000 genomes]
rs12572862	1.00[AFR][1000 genomes]
rs12573268	0.82[ASN][1000 genomes]
rs1329993	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2297144	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28365962	0.98[ASN][1000 genomes]
rs3758404	0.95[ASN][1000 genomes]
rs3780924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3781101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3781102	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3802526	0.96[ASN][1000 genomes]
rs3818633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3824592	0.98[ASN][1000 genomes]
rs3824690	1.00[AFR][1000 genomes]
rs4747586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4749222	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4749227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4749229	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4749234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73598035	0.98[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27389800-27441200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:27390000-27442000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:27390200-27435000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr10:27393800-27438600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:27394200-27432600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:27394800-27432800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:27395400-27437800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:27396200-27440600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr10:27396800-27432000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr10:27397600-27438600	Strong transcription	Fetal Thymus	thymus
11	chr10:27398200-27434200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr10:27398400-27428400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr10:27398400-27435200	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr10:27398600-27431600	Strong transcription	HUES48 Cell Line	embryonic stem cell
15	chr10:27398600-27434800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr10:27398600-27434800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr10:27398600-27434800	Strong transcription	Primary T helper cells PMA-I stimulated	--
18	chr10:27398600-27436400	Strong transcription	Dnd41	blood
19	chr10:27398800-27438200	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr10:27398800-27438200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr10:27399000-27431400	Strong transcription	Placenta	Placenta
22	chr10:27399600-27435200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr10:27399600-27438400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr10:27399800-27438600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr10:27400400-27438400	Strong transcription	Liver	Liver
26	chr10:27401200-27435400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:27403000-27428400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr10:27403200-27431600	Strong transcription	NH-A	brain
29	chr10:27407800-27436400	Weak transcription	Right Ventricle	heart
30	chr10:27411200-27436000	Weak transcription	Esophagus	oesophagus
31	chr10:27412400-27440200	Weak transcription	Fetal Heart	heart
32	chr10:27413600-27430800	Strong transcription	Duodenum Smooth Muscle	Duodenum
33	chr10:27415400-27436200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr10:27416800-27430800	Strong transcription	HUVEC	blood vessel
35	chr10:27418000-27436400	Weak transcription	Spleen	Spleen
36	chr10:27418200-27430000	Weak transcription	Pancreas	Pancrea
37	chr10:27419200-27438600	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr10:27419200-27438800	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr10:27419400-27441400	Weak transcription	Stomach Mucosa	stomach
40	chr10:27419800-27436200	Weak transcription	Gastric	stomach
41	chr10:27421000-27430800	Weak transcription	Hela-S3	cervix
42	chr10:27421000-27436200	Weak transcription	Fetal Brain Male	brain
43	chr10:27421200-27430000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr10:27421800-27428800	Weak transcription	Fetal Intestine Small	intestine
45	chr10:27421800-27431600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr10:27423400-27436400	Weak transcription	Colonic Mucosa	Colon
47	chr10:27423600-27430000	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr10:27423600-27431400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr10:27423600-27435000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr10:27423800-27428200	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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