Variant report

Variant	rs3781102
Chromosome Location	chr10:27369689-27369690
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11015447	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11015449	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11015546	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12218581	1.00[YRI][hapmap]
rs12219637	1.00[YRI][hapmap]
rs12220671	1.00[YRI][hapmap]
rs12411984	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12414273	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12415390	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs12416077	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12416080	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12569491	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12569598	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12570065	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12570662	0.81[JPT][hapmap]
rs12571529	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12572302	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12572707	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs12572726	1.00[YRI][hapmap]
rs12572862	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12573268	0.90[ASN][1000 genomes]
rs12573419	0.80[ASN][1000 genomes]
rs1329993	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2297144	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28365962	0.85[ASN][1000 genomes]
rs3758404	0.82[ASN][1000 genomes]
rs3780924	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3780925	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3781101	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3802526	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs3818633	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3824592	0.85[ASN][1000 genomes]
rs3928123	1.00[YRI][hapmap]
rs4747586	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4749201	1.00[YRI][hapmap]
rs4749222	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4749227	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4749229	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4749234	1.00[CHB][hapmap];1.00[AMR][1000 genomes]
rs73598035	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894979	chr10:27325119-27375411	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27283200-27388400	Weak transcription	Psoas Muscle	Psoas
2	chr10:27291600-27388000	Weak transcription	Small Intestine	intestine
3	chr10:27313200-27388200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr10:27313200-27388600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr10:27313400-27388400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr10:27314600-27388800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:27323400-27388600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr10:27326800-27388200	Weak transcription	Brain Substantia Nigra	brain
9	chr10:27328000-27388200	Weak transcription	K562	blood
10	chr10:27330200-27381400	Weak transcription	HSMMtube	muscle
11	chr10:27333000-27384600	Weak transcription	Fetal Heart	heart
12	chr10:27341400-27376600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr10:27350200-27387800	Weak transcription	HMEC	breast
14	chr10:27358600-27388400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr10:27360400-27378800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr10:27360400-27383800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:27360400-27384800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:27360600-27370400	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr10:27360600-27371600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:27360600-27372000	Strong transcription	Adipose Nuclei	Adipose
21	chr10:27360600-27384600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr10:27361000-27370000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr10:27361600-27388200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr10:27362200-27373400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr10:27362200-27388400	Weak transcription	Colonic Mucosa	Colon
26	chr10:27362400-27371200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr10:27362400-27376200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr10:27362400-27377200	Weak transcription	Hela-S3	cervix
29	chr10:27362400-27388000	Weak transcription	Right Ventricle	heart
30	chr10:27362400-27388200	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr10:27362400-27388400	Weak transcription	Pancreas	Pancrea
32	chr10:27362600-27373200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr10:27362600-27376600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr10:27362600-27376600	Weak transcription	Ovary	ovary
35	chr10:27362600-27376600	Weak transcription	Thymus	Thymus
36	chr10:27362600-27376800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr10:27362600-27377600	Weak transcription	Rectal Smooth Muscle	rectum
38	chr10:27362600-27377800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr10:27362600-27388400	Weak transcription	Esophagus	oesophagus
40	chr10:27362600-27388400	Weak transcription	Spleen	Spleen
41	chr10:27362600-27388800	Weak transcription	Gastric	stomach
42	chr10:27362800-27374200	Weak transcription	Brain Hippocampus Middle	brain
43	chr10:27362800-27382200	Weak transcription	Brain Angular Gyrus	brain
44	chr10:27362800-27388600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr10:27363000-27378000	Weak transcription	Fetal Brain Male	brain
46	chr10:27363400-27370000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
47	chr10:27363600-27377200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr10:27363800-27369800	Strong transcription	HUES64 Cell Line	embryonic stem cell
49	chr10:27364000-27369800	Strong transcription	NHDF-Ad	bronchial
50	chr10:27364200-27370000	Strong transcription	Skeletal Muscle Female	skeletal muscle

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