Variant report

Variant	rs3802526
Chromosome Location	chr10:27459746-27459747
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27459265..27462197-chr10:27529566..27532512,2	K562	blood:

Variant related genes	Relation type
ENSG00000262412	Chromatin interaction
ENSG00000107897	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11015447	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs11015449	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs11015546	1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs11015603	0.87[YRI][hapmap]
rs12356360	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs12411984	0.87[ASN][1000 genomes]
rs12414055	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12414273	0.85[ASN][1000 genomes]
rs12415390	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs12416077	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs12416080	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs12569491	0.96[ASN][1000 genomes]
rs12569598	0.89[ASN][1000 genomes]
rs12570065	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs12570662	0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs12571529	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12571579	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12572302	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12572325	0.82[JPT][hapmap]
rs12572707	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12572862	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs12573268	0.80[ASN][1000 genomes]
rs1329993	1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs2297144	1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs28365962	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3758404	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3758407	0.86[EUR][1000 genomes]
rs3780924	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3780925	0.96[ASN][1000 genomes]
rs3781101	1.00[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs3781102	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs3818633	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs3824592	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4747586	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4749222	1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs4749227	0.91[ASN][1000 genomes]
rs4749229	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4749232	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4749234	1.00[CHB][hapmap]
rs56163609	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73598015	0.82[EUR][1000 genomes]
rs73598019	0.82[EUR][1000 genomes]
rs73598020	0.82[EUR][1000 genomes]
rs73598021	0.82[EUR][1000 genomes]
rs73598022	0.82[EUR][1000 genomes]
rs73598023	0.82[EUR][1000 genomes]
rs73598024	0.82[EUR][1000 genomes]
rs73598035	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73598037	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73598041	0.96[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs73598044	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422253	chr10:27431366-27575370	Strong transcription Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3802526	MASTL	cis	lung	GTEx

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27445000-27486200	Weak transcription	Fetal Heart	heart
2	chr10:27445400-27490800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:27445600-27470800	Weak transcription	Psoas Muscle	Psoas
4	chr10:27446400-27476200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
5	chr10:27446400-27476400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr10:27446400-27490800	Weak transcription	Fetal Brain Male	brain
7	chr10:27446400-27499200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr10:27446400-27508400	Weak transcription	Small Intestine	intestine
9	chr10:27446600-27476000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr10:27446600-27477200	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr10:27447000-27460400	Strong transcription	Placenta	Placenta
12	chr10:27447000-27476600	Strong transcription	HUES6 Cell Line	embryonic stem cell
13	chr10:27447000-27477000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr10:27447000-27477800	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr10:27447200-27461000	Strong transcription	H1 Cell Line	embryonic stem cell
16	chr10:27447200-27461000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr10:27447200-27476200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr10:27447200-27476600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr10:27447200-27478000	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr10:27447200-27478200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:27447400-27460200	Strong transcription	Adipose Nuclei	Adipose
22	chr10:27447400-27460600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr10:27447400-27460800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr10:27447400-27464000	Weak transcription	Stomach Mucosa	stomach
25	chr10:27447400-27464200	Strong transcription	Fetal Thymus	thymus
26	chr10:27447400-27476600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr10:27447400-27477200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr10:27447400-27478200	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr10:27447600-27460200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr10:27447600-27460200	Strong transcription	Primary neutrophils fromperipheralblood	blood
31	chr10:27447600-27460800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr10:27447800-27459800	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr10:27448200-27460000	Strong transcription	GM12878-XiMat	blood
34	chr10:27448200-27476000	Strong transcription	Dnd41	blood
35	chr10:27449400-27472800	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr10:27449600-27487200	Weak transcription	Colon Smooth Muscle	Colon
37	chr10:27450200-27470600	Strong transcription	A549	lung
38	chr10:27450600-27460000	Strong transcription	Duodenum Smooth Muscle	Duodenum
39	chr10:27451600-27460000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr10:27451600-27460200	Strong transcription	iPS-15b Cell Line	embryonic stem cell
41	chr10:27452000-27460000	Strong transcription	Sigmoid Colon	Sigmoid Colon
42	chr10:27452400-27460200	Strong transcription	Rectal Mucosa Donor 31	rectum
43	chr10:27452400-27467200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr10:27453000-27460000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr10:27453000-27460000	Strong transcription	HSMM	muscle
46	chr10:27453000-27487000	Weak transcription	Spleen	Spleen
47	chr10:27453200-27460800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr10:27454000-27460000	Strong transcription	NH-A	brain
49	chr10:27454000-27460200	Strong transcription	HMEC	breast
50	chr10:27454200-27460200	Strong transcription	Primary T cells from cord blood	blood

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