Variant report

Variant	rs72629740
Chromosome Location	chr10:27157340-27157341
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12415181	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12416351	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12571068	0.87[EUR][1000 genomes]
rs12571996	0.87[EUR][1000 genomes]
rs12572166	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17754383	1.00[EUR][1000 genomes]
rs17754431	1.00[EUR][1000 genomes]
rs17816281	0.89[EUR][1000 genomes]
rs17816804	1.00[EUR][1000 genomes]
rs1815322	0.89[EUR][1000 genomes]
rs2296544	1.00[EUR][1000 genomes]
rs2477924	0.89[EUR][1000 genomes]
rs2477926	0.89[EUR][1000 genomes]
rs2477927	0.89[EUR][1000 genomes]
rs3802611	1.00[EUR][1000 genomes]
rs4628582	1.00[EUR][1000 genomes]
rs72629715	1.00[EUR][1000 genomes]
rs72629716	1.00[EUR][1000 genomes]
rs72629718	1.00[EUR][1000 genomes]
rs72629719	1.00[EUR][1000 genomes]
rs72629720	1.00[EUR][1000 genomes]
rs72629721	1.00[EUR][1000 genomes]
rs72629722	1.00[EUR][1000 genomes]
rs72629723	1.00[EUR][1000 genomes]
rs72629729	1.00[EUR][1000 genomes]
rs72629735	1.00[EUR][1000 genomes]
rs72629736	1.00[EUR][1000 genomes]
rs72629737	1.00[EUR][1000 genomes]
rs72629739	1.00[EUR][1000 genomes]
rs72629742	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72629743	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72629744	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72629745	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72629746	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72629747	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72629748	0.82[ASN][1000 genomes]
rs72629749	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72629750	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs899372	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831812	chr10:27061506-27234267	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv971858	chr10:27066006-27157708	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27150800-27157800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr10:27150800-27157800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr10:27152000-27158000	Weak transcription	Pancreas	Pancrea
4	chr10:27153000-27158400	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr10:27153400-27158400	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr10:27155000-27160800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr10:27155800-27159200	Enhancers	NHEK	skin
8	chr10:27156200-27158200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr10:27156600-27158800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr10:27157000-27160000	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr10:27157200-27158400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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