Variant report

Variant	rs72629729
Chromosome Location	chr10:27091005-27091006
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27087122..27088975-chr10:27089037..27091906,2	MCF-7	breast:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10159978	0.82[ASN][1000 genomes]
rs10829072	0.98[ASN][1000 genomes]
rs10829083	0.82[ASN][1000 genomes]
rs10829088	0.82[ASN][1000 genomes]
rs11015298	1.00[ASN][1000 genomes]
rs1115707	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12415181	0.87[EUR][1000 genomes]
rs12416351	0.87[EUR][1000 genomes]
rs12571068	0.87[EUR][1000 genomes]
rs12571996	0.87[EUR][1000 genomes]
rs12572166	1.00[EUR][1000 genomes]
rs17754383	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17754419	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17754431	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17816281	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17816551	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17816804	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1815322	0.89[EUR][1000 genomes]
rs2296544	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2477924	0.89[EUR][1000 genomes]
rs2477926	0.89[EUR][1000 genomes]
rs2477927	0.89[EUR][1000 genomes]
rs3802611	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4628582	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72629715	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72629716	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72629717	1.00[AMR][1000 genomes]
rs72629718	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72629719	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72629720	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72629721	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72629722	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72629723	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72629724	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72629725	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72629726	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72629727	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72629728	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72629730	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72629731	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72629733	1.00[AMR][1000 genomes]
rs72629734	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs72629735	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72629736	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72629737	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72629738	1.00[AMR][1000 genomes]
rs72629739	1.00[EUR][1000 genomes]
rs72629740	1.00[EUR][1000 genomes]
rs72629742	1.00[EUR][1000 genomes]
rs72629743	1.00[EUR][1000 genomes]
rs72629744	1.00[EUR][1000 genomes]
rs72629745	1.00[EUR][1000 genomes]
rs72629746	1.00[EUR][1000 genomes]
rs72629747	1.00[EUR][1000 genomes]
rs72629749	1.00[EUR][1000 genomes]
rs72629750	1.00[EUR][1000 genomes]
rs7894246	0.82[ASN][1000 genomes]
rs7910026	0.82[ASN][1000 genomes]
rs899372	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs899373	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv933544	chr10:27005220-27111998	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv831812	chr10:27061506-27234267	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv971858	chr10:27066006-27157708	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv947600	chr10:27090659-27093432	Enhancers Weak transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27070800-27091800	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr10:27074800-27091600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:27074800-27091800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr10:27075000-27091600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr10:27075000-27104600	Weak transcription	Esophagus	oesophagus
6	chr10:27079800-27091800	Weak transcription	Fetal Heart	heart
7	chr10:27079800-27092200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:27080800-27092000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr10:27082200-27105400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:27082600-27091600	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr10:27082600-27094000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr10:27083600-27094800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr10:27085600-27119000	Weak transcription	Fetal Lung	lung
14	chr10:27085800-27095600	Enhancers	Primary B cells from peripheral blood	blood
15	chr10:27086000-27093400	Weak transcription	Fetal Intestine Small	intestine
16	chr10:27086200-27096600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr10:27086600-27110400	Weak transcription	Fetal Intestine Large	intestine
18	chr10:27086800-27092000	Weak transcription	A549	lung
19	chr10:27087000-27097000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr10:27087200-27094400	Weak transcription	Aorta	Aorta
21	chr10:27087200-27096800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr10:27087600-27091400	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr10:27087600-27091400	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr10:27087800-27091400	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr10:27087800-27091600	Weak transcription	Psoas Muscle	Psoas
26	chr10:27088000-27091400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr10:27088000-27091600	Weak transcription	Brain Anterior Caudate	brain
28	chr10:27088000-27096000	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr10:27088200-27093400	Weak transcription	Rectal Smooth Muscle	rectum
30	chr10:27088200-27100800	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr10:27088400-27096800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr10:27088600-27098800	Weak transcription	Pancreas	Pancrea
33	chr10:27089000-27091200	Weak transcription	Duodenum Mucosa	Duodenum
34	chr10:27089000-27095600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
35	chr10:27089200-27092000	Flanking Active TSS	GM12878-XiMat	blood
36	chr10:27089400-27091200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr10:27089800-27091600	Weak transcription	Thymus	Thymus
38	chr10:27089800-27093000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr10:27090000-27092000	Enhancers	Small Intestine	intestine
40	chr10:27090000-27092400	Enhancers	Brain Substantia Nigra	brain
41	chr10:27090000-27093800	Enhancers	Dnd41	blood
42	chr10:27090000-27096400	Weak transcription	Fetal Stomach	stomach
43	chr10:27090200-27091600	Enhancers	Brain Hippocampus Middle	brain
44	chr10:27090200-27092400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr10:27090200-27093600	Enhancers	Primary hematopoietic stem cells short term culture	blood
46	chr10:27090200-27094000	Weak transcription	Right Atrium	heart
47	chr10:27090400-27091400	Flanking Active TSS	Primary B cells from cord blood	blood
48	chr10:27090400-27091600	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr10:27090400-27091600	Weak transcription	Primary hematopoietic stem cells	blood
50	chr10:27090400-27091600	Weak transcription	Spleen	Spleen

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