Variant report

Variant	rs1115707
Chromosome Location	chr10:27085143-27085144
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27085060..27087648-chr10:27098555..27100631,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PDSS1-6	chr10:27084559-27085482	ncRnaDb_ncrna_FR197548_1

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10159978	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10829072	0.82[ASN][1000 genomes]
rs10829083	0.98[ASN][1000 genomes]
rs10829088	0.98[ASN][1000 genomes]
rs11015266	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs11015267	0.93[ASN][1000 genomes]
rs11015276	0.93[ASN][1000 genomes]
rs11015298	0.84[ASN][1000 genomes]
rs17754383	0.88[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17754419	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17754431	0.88[CHB][hapmap];0.89[CHD][hapmap];0.97[GIH][hapmap];1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17816281	1.00[AMR][1000 genomes]
rs17816551	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17816804	0.88[CHB][hapmap];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2296544	1.00[AMR][1000 genomes]
rs3802611	1.00[AMR][1000 genomes]
rs4628582	0.82[CHB][hapmap];0.84[ASN][1000 genomes]
rs55806416	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7082503	0.89[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs72629715	1.00[AMR][1000 genomes]
rs72629716	1.00[AMR][1000 genomes]
rs72629717	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72629718	1.00[AMR][1000 genomes]
rs72629719	1.00[AMR][1000 genomes]
rs72629720	1.00[AMR][1000 genomes]
rs72629721	1.00[AMR][1000 genomes]
rs72629722	1.00[AMR][1000 genomes]
rs72629723	1.00[AMR][1000 genomes]
rs72629724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72629725	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72629726	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72629727	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72629728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72629729	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72629730	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72629731	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72629733	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72629734	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72629735	1.00[AMR][1000 genomes]
rs72629736	1.00[AMR][1000 genomes]
rs72629737	1.00[AMR][1000 genomes]
rs72629738	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7894246	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7910026	0.89[CHB][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs899372	0.88[CHB][hapmap];0.84[ASN][1000 genomes]
rs899373	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv933544	chr10:27005220-27111998	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv831812	chr10:27061506-27234267	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv971858	chr10:27066006-27157708	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27070800-27091800	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr10:27071200-27089000	Weak transcription	Lung	lung
3	chr10:27071200-27089600	Weak transcription	Spleen	Spleen
4	chr10:27071400-27088600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr10:27073000-27087000	Weak transcription	Thymus	Thymus
6	chr10:27073000-27088200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr10:27074800-27091600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr10:27074800-27091800	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr10:27075000-27087000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr10:27075000-27087000	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr10:27075000-27089400	Weak transcription	Left Ventricle	heart
12	chr10:27075000-27091600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr10:27075000-27104600	Weak transcription	Esophagus	oesophagus
14	chr10:27075200-27088400	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr10:27079800-27091800	Weak transcription	Fetal Heart	heart
16	chr10:27079800-27092200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr10:27080800-27092000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr10:27082200-27088400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr10:27082200-27105400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:27082400-27085400	Weak transcription	Fetal Lung	lung
21	chr10:27082400-27086400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr10:27082600-27087000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr10:27082600-27091600	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr10:27082600-27094000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr10:27082800-27086200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr10:27082800-27086400	Weak transcription	Brain Cingulate Gyrus	brain
27	chr10:27082800-27086600	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr10:27082800-27087600	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr10:27082800-27088400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr10:27083400-27087800	ZNF genes & repeats	GM12878-XiMat	blood
31	chr10:27083600-27087000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr10:27083600-27089800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr10:27083600-27094800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr10:27084200-27085200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
35	chr10:27084200-27086000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr10:27084200-27086800	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr10:27084400-27085200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
38	chr10:27084600-27085600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr10:27084600-27086000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr10:27084600-27086400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr10:27084800-27086000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
42	chr10:27085000-27085600	ZNF genes & repeats	Primary B cells from cord blood	blood
43	chr10:27085000-27085800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
44	chr10:27085000-27085800	Weak transcription	Duodenum Mucosa	Duodenum
45	chr10:27085000-27086000	Weak transcription	Fetal Intestine Large	intestine
46	chr10:27085000-27087200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr10:27085000-27088400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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