Variant report

Variant	rs11015298
Chromosome Location	chr10:27093491-27093492
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27089103..27090816-chr10:27092531..27095480,2	K562	blood:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10159978	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10764642	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10764644	0.95[AFR][1000 genomes]
rs10764645	0.87[AFR][1000 genomes]
rs10829055	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs10829056	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs10829057	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs10829059	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10829061	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10829062	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10829068	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10829069	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10829072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10829073	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10829074	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10829079	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10829083	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10829085	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10829088	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10829107	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11015262	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs11015266	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11015267	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11015276	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11015283	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11015300	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11015308	0.91[EUR][1000 genomes]
rs11015313	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11015340	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11015343	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1115707	0.84[ASN][1000 genomes]
rs12243481	0.95[AFR][1000 genomes]
rs12247684	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12256219	0.90[AFR][1000 genomes]
rs12265625	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12267091	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12358409	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1408530	0.88[AFR][1000 genomes]
rs16927341	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17754383	1.00[ASN][1000 genomes]
rs17754419	0.84[ASN][1000 genomes]
rs17754431	1.00[ASN][1000 genomes]
rs17816551	0.84[ASN][1000 genomes]
rs17816804	0.94[ASN][1000 genomes]
rs2296544	0.82[ASN][1000 genomes]
rs28538332	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3802611	0.90[ASN][1000 genomes]
rs4628582	1.00[ASN][1000 genomes]
rs7082503	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs718827	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72629715	0.88[ASN][1000 genomes]
rs72629716	0.88[ASN][1000 genomes]
rs72629718	0.88[ASN][1000 genomes]
rs72629719	0.93[ASN][1000 genomes]
rs72629720	0.93[ASN][1000 genomes]
rs72629721	0.93[ASN][1000 genomes]
rs72629722	0.93[ASN][1000 genomes]
rs72629723	0.93[ASN][1000 genomes]
rs72629724	0.84[ASN][1000 genomes]
rs72629725	0.84[ASN][1000 genomes]
rs72629726	0.84[ASN][1000 genomes]
rs72629727	0.84[ASN][1000 genomes]
rs72629728	0.84[ASN][1000 genomes]
rs72629729	1.00[ASN][1000 genomes]
rs72629730	0.84[ASN][1000 genomes]
rs72629731	0.82[ASN][1000 genomes]
rs72629734	0.81[ASN][1000 genomes]
rs72629735	0.90[ASN][1000 genomes]
rs72629736	0.90[ASN][1000 genomes]
rs72629737	0.87[ASN][1000 genomes]
rs7894246	0.82[ASN][1000 genomes]
rs7910026	0.82[ASN][1000 genomes]
rs899372	1.00[ASN][1000 genomes]
rs899373	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv933544	chr10:27005220-27111998	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv831812	chr10:27061506-27234267	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv971858	chr10:27066006-27157708	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27075000-27104600	Weak transcription	Esophagus	oesophagus
2	chr10:27082200-27105400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr10:27082600-27094000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr10:27083600-27094800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:27085600-27119000	Weak transcription	Fetal Lung	lung
6	chr10:27085800-27095600	Enhancers	Primary B cells from peripheral blood	blood
7	chr10:27086200-27096600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr10:27086600-27110400	Weak transcription	Fetal Intestine Large	intestine
9	chr10:27087000-27097000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr10:27087200-27094400	Weak transcription	Aorta	Aorta
11	chr10:27087200-27096800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr10:27088000-27096000	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr10:27088200-27100800	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr10:27088400-27096800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr10:27088600-27098800	Weak transcription	Pancreas	Pancrea
16	chr10:27089000-27095600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr10:27090000-27093800	Enhancers	Dnd41	blood
18	chr10:27090000-27096400	Weak transcription	Fetal Stomach	stomach
19	chr10:27090200-27093600	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr10:27090200-27094000	Weak transcription	Right Atrium	heart
21	chr10:27090400-27095200	Weak transcription	Lung	lung
22	chr10:27090400-27097400	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr10:27090600-27094000	Enhancers	Primary T cells from cord blood	blood
24	chr10:27090600-27096800	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr10:27091400-27095200	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr10:27091400-27095200	Enhancers	Pancreatic Islets	Pancreatic Islet
27	chr10:27091400-27095400	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr10:27091400-27095600	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr10:27091400-27095600	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr10:27091400-27095800	Enhancers	Primary T killer memory cells from peripheral blood	blood
31	chr10:27091600-27093600	Enhancers	Primary hematopoietic stem cells	blood
32	chr10:27091600-27094200	Enhancers	Stomach Mucosa	stomach
33	chr10:27091600-27095600	Enhancers	Thymus	Thymus
34	chr10:27091800-27094400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr10:27091800-27113200	Weak transcription	Placenta	Placenta
36	chr10:27092000-27094000	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr10:27092000-27094000	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr10:27092000-27094000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr10:27092000-27094000	Weak transcription	Psoas Muscle	Psoas
40	chr10:27092000-27094600	Weak transcription	Spleen	Spleen
41	chr10:27092000-27095000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr10:27092000-27095600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr10:27092200-27093800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr10:27092200-27094000	Weak transcription	Brain Cingulate Gyrus	brain
45	chr10:27092200-27094000	Weak transcription	Fetal Heart	heart
46	chr10:27092200-27094000	Weak transcription	Right Ventricle	heart
47	chr10:27092200-27094200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr10:27092200-27094600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr10:27092200-27099600	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr10:27092400-27093600	Weak transcription	Brain Substantia Nigra	brain

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