Variant report

Variant	rs899373
Chromosome Location	chr10:27094744-27094745
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27093725..27095601-chr10:27102289..27104640,2	MCF-7	breast:
2	chr10:27089103..27090816-chr10:27092531..27095480,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10159978	0.89[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10829083	0.96[ASN][1000 genomes]
rs10829088	0.96[ASN][1000 genomes]
rs11015266	0.89[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs11015267	0.91[ASN][1000 genomes]
rs11015276	0.91[ASN][1000 genomes]
rs11015298	0.82[ASN][1000 genomes]
rs1115707	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17754383	0.82[ASN][1000 genomes]
rs17754419	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17754431	0.82[ASN][1000 genomes]
rs17816551	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4628582	0.84[CHB][hapmap];0.82[ASN][1000 genomes]
rs55806416	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7082503	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7086847	1.00[YRI][hapmap]
rs7100699	0.86[AFR][1000 genomes]
rs72629717	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72629724	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72629725	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72629726	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72629727	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72629728	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72629729	0.82[ASN][1000 genomes]
rs72629730	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72629731	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72629733	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72629734	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72629738	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7894246	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7904762	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs7905878	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs7910026	1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs899372	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv933544	chr10:27005220-27111998	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv831812	chr10:27061506-27234267	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv971858	chr10:27066006-27157708	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27075000-27104600	Weak transcription	Esophagus	oesophagus
2	chr10:27082200-27105400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr10:27083600-27094800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr10:27085600-27119000	Weak transcription	Fetal Lung	lung
5	chr10:27085800-27095600	Enhancers	Primary B cells from peripheral blood	blood
6	chr10:27086200-27096600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr10:27086600-27110400	Weak transcription	Fetal Intestine Large	intestine
8	chr10:27087000-27097000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr10:27087200-27096800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr10:27088000-27096000	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr10:27088200-27100800	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr10:27088400-27096800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr10:27088600-27098800	Weak transcription	Pancreas	Pancrea
14	chr10:27089000-27095600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr10:27090000-27096400	Weak transcription	Fetal Stomach	stomach
16	chr10:27090400-27095200	Weak transcription	Lung	lung
17	chr10:27090400-27097400	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr10:27090600-27096800	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr10:27091400-27095200	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr10:27091400-27095200	Enhancers	Pancreatic Islets	Pancreatic Islet
21	chr10:27091400-27095400	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr10:27091400-27095600	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr10:27091400-27095600	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr10:27091400-27095800	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr10:27091600-27095600	Enhancers	Thymus	Thymus
26	chr10:27091800-27113200	Weak transcription	Placenta	Placenta
27	chr10:27092000-27095000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr10:27092000-27095600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr10:27092200-27099600	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr10:27092400-27095000	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr10:27092600-27096400	Weak transcription	HepG2	liver
32	chr10:27092800-27095200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr10:27092800-27095600	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr10:27093000-27095400	Enhancers	Fetal Thymus	thymus
35	chr10:27093000-27095400	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr10:27093000-27095800	Enhancers	Duodenum Mucosa	Duodenum
37	chr10:27093000-27096800	Enhancers	Small Intestine	intestine
38	chr10:27093200-27095000	Weak transcription	Gastric	stomach
39	chr10:27093200-27095000	Enhancers	Rectal Mucosa Donor 31	rectum
40	chr10:27093400-27095200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr10:27093400-27095200	Enhancers	Fetal Intestine Small	intestine
42	chr10:27093400-27095400	Enhancers	Colon Smooth Muscle	Colon
43	chr10:27093400-27095600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr10:27093400-27095600	Enhancers	Brain Anterior Caudate	brain
45	chr10:27093400-27095800	Enhancers	ES-I3 Cell Line	embryonic stem cell
46	chr10:27093400-27095800	Genic enhancers	Primary B cells from cord blood	blood
47	chr10:27093400-27095800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr10:27093400-27095800	Enhancers	Brain Angular Gyrus	brain
49	chr10:27093400-27112400	Weak transcription	Left Ventricle	heart
50	chr10:27093600-27095200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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