Variant report

Variant	rs7894246
Chromosome Location	chr10:27097356-27097357
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27095663..27097538-chr10:27098853..27101729,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10159978	0.82[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10829083	0.96[ASN][1000 genomes]
rs10829088	0.96[ASN][1000 genomes]
rs11015266	0.82[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs11015267	0.91[ASN][1000 genomes]
rs11015276	0.91[ASN][1000 genomes]
rs11015298	0.82[ASN][1000 genomes]
rs1115707	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17754383	0.82[ASN][1000 genomes]
rs17754419	0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17754431	0.82[ASN][1000 genomes]
rs17816551	0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4628582	0.82[ASN][1000 genomes]
rs55806416	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7082503	0.89[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7086847	1.00[YRI][hapmap]
rs7100699	0.86[AFR][1000 genomes]
rs72629717	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72629724	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72629725	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72629726	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72629727	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72629728	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72629729	0.82[ASN][1000 genomes]
rs72629730	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72629731	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72629733	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72629734	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72629738	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7904762	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs7905878	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs7910026	0.95[CHB][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs899372	0.82[ASN][1000 genomes]
rs899373	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv933544	chr10:27005220-27111998	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv831812	chr10:27061506-27234267	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv971858	chr10:27066006-27157708	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27075000-27104600	Weak transcription	Esophagus	oesophagus
2	chr10:27082200-27105400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr10:27085600-27119000	Weak transcription	Fetal Lung	lung
4	chr10:27086600-27110400	Weak transcription	Fetal Intestine Large	intestine
5	chr10:27088200-27100800	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr10:27088600-27098800	Weak transcription	Pancreas	Pancrea
7	chr10:27090400-27097400	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr10:27091800-27113200	Weak transcription	Placenta	Placenta
9	chr10:27092200-27099600	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr10:27093400-27112400	Weak transcription	Left Ventricle	heart
11	chr10:27093600-27103000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr10:27094000-27108000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr10:27094600-27099000	Weak transcription	A549	lung
14	chr10:27094600-27099400	Weak transcription	Fetal Muscle Leg	muscle
15	chr10:27094600-27108400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr10:27094600-27111200	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr10:27094800-27104400	Weak transcription	Psoas Muscle	Psoas
18	chr10:27094800-27108000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr10:27094800-27111200	Weak transcription	Ovary	ovary
20	chr10:27095000-27130600	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr10:27095000-27138600	Weak transcription	Fetal Muscle Trunk	muscle
22	chr10:27095200-27099400	Weak transcription	Fetal Intestine Small	intestine
23	chr10:27095200-27105000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr10:27095200-27106600	Weak transcription	Osteobl	bone
25	chr10:27095200-27110800	Weak transcription	Primary hematopoietic stem cells	blood
26	chr10:27095200-27119000	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr10:27095400-27099000	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr10:27095400-27104400	Weak transcription	Brain Cingulate Gyrus	brain
29	chr10:27095400-27110800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr10:27095400-27111200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr10:27095400-27113000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr10:27095400-27116200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr10:27095400-27129800	Weak transcription	NHEK	skin
34	chr10:27095600-27098800	Weak transcription	Brain Anterior Caudate	brain
35	chr10:27095600-27099000	Weak transcription	Spleen	Spleen
36	chr10:27095600-27101200	Weak transcription	NHLF	lung
37	chr10:27095600-27103000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr10:27095600-27103400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr10:27095600-27105000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr10:27095600-27105800	Weak transcription	Lung	lung
41	chr10:27095600-27105800	Weak transcription	Thymus	Thymus
42	chr10:27095600-27106000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr10:27095600-27106000	Weak transcription	Aorta	Aorta
44	chr10:27095600-27107800	Weak transcription	Brain Hippocampus Middle	brain
45	chr10:27095600-27109800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr10:27095600-27111000	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr10:27095600-27114600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr10:27095600-27115400	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr10:27095600-27129000	Weak transcription	Right Atrium	heart
50	chr10:27095600-27132600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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