Variant report

Variant	rs72629738
Chromosome Location	chr10:27144312-27144313
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:27131106..27133856-chr10:27141673..27144502,2	MCF-7	breast:
2	chr10:27142880..27147228-chr10:27147432..27151509,4	K562	blood:
3	chr10:27144252..27146067-chr10:27147473..27149312,2	K562	blood:
4	chr10:27134235..27137117-chr10:27142370..27144378,2	K562	blood:
5	chr10:27142352..27145740-chr10:27147848..27150429,5	MCF-7	breast:
6	chr10:27143549..27145816-chr10:27147731..27150549,4	MCF-7	breast:
7	chr10:27137537..27139722-chr10:27142265..27144815,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136754	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10159978	0.90[ASN][1000 genomes]
rs10829083	0.90[ASN][1000 genomes]
rs10829088	0.90[ASN][1000 genomes]
rs11015266	0.85[ASN][1000 genomes]
rs11015267	0.86[ASN][1000 genomes]
rs11015276	0.86[ASN][1000 genomes]
rs1115707	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17754383	1.00[AMR][1000 genomes]
rs17754419	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17754431	1.00[AMR][1000 genomes]
rs17816281	1.00[AMR][1000 genomes]
rs17816551	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17816804	1.00[AMR][1000 genomes]
rs2296544	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3802611	1.00[AMR][1000 genomes]
rs55806416	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7082503	0.88[ASN][1000 genomes]
rs72629715	1.00[AMR][1000 genomes]
rs72629716	1.00[AMR][1000 genomes]
rs72629717	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72629718	1.00[AMR][1000 genomes]
rs72629719	1.00[AMR][1000 genomes]
rs72629720	1.00[AMR][1000 genomes]
rs72629721	1.00[AMR][1000 genomes]
rs72629722	1.00[AMR][1000 genomes]
rs72629723	1.00[AMR][1000 genomes]
rs72629724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72629725	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72629726	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72629727	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72629728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72629729	1.00[AMR][1000 genomes]
rs72629730	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72629731	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72629733	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72629734	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72629735	1.00[AMR][1000 genomes]
rs72629736	1.00[AMR][1000 genomes]
rs72629737	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7894246	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7910026	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs899373	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831812	chr10:27061506-27234267	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv971858	chr10:27066006-27157708	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27095600-27148800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:27111800-27147000	Weak transcription	Fetal Intestine Large	intestine
3	chr10:27119600-27147200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr10:27123000-27145000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr10:27124400-27146200	Weak transcription	Fetal Muscle Leg	muscle
6	chr10:27129400-27146000	Weak transcription	Pancreas	Pancrea
7	chr10:27129400-27146400	Weak transcription	Gastric	stomach
8	chr10:27129400-27146600	Weak transcription	Esophagus	oesophagus
9	chr10:27129400-27147200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr10:27129400-27148200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr10:27129600-27146600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr10:27130200-27145600	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr10:27130800-27145000	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr10:27131200-27146000	Weak transcription	Right Atrium	heart
15	chr10:27131600-27145000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr10:27133600-27146400	Weak transcription	Psoas Muscle	Psoas
17	chr10:27133600-27148200	Weak transcription	Aorta	Aorta
18	chr10:27134000-27145000	Weak transcription	Fetal Thymus	thymus
19	chr10:27134000-27145400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr10:27134000-27145400	Weak transcription	Adipose Nuclei	Adipose
21	chr10:27134000-27146800	Weak transcription	Brain Hippocampus Middle	brain
22	chr10:27134200-27145400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr10:27135800-27148200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr10:27137000-27146200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr10:27137000-27146800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr10:27137400-27145400	Weak transcription	Hela-S3	cervix
27	chr10:27138600-27147000	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr10:27139800-27145400	Weak transcription	Brain Substantia Nigra	brain
29	chr10:27140600-27145600	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr10:27140600-27146800	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr10:27140600-27147000	Weak transcription	Fetal Lung	lung
32	chr10:27140800-27145400	Weak transcription	Brain Anterior Caudate	brain
33	chr10:27140800-27147000	Weak transcription	Brain Cingulate Gyrus	brain
34	chr10:27141000-27146600	Weak transcription	Fetal Intestine Small	intestine
35	chr10:27141000-27147000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr10:27142000-27146600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
37	chr10:27142000-27146800	Weak transcription	NHLF	lung
38	chr10:27142200-27144600	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr10:27142200-27147200	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr10:27142600-27144600	Enhancers	HepG2	liver
41	chr10:27142600-27148000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr10:27142800-27144400	Enhancers	Primary T helper naive cells from peripheral blood	blood
43	chr10:27142800-27144600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr10:27142800-27144800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr10:27142800-27145400	Weak transcription	Right Ventricle	heart
46	chr10:27142800-27146000	Weak transcription	Lung	lung
47	chr10:27142800-27147000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
48	chr10:27142800-27147400	Enhancers	Primary neutrophils fromperipheralblood	blood
49	chr10:27142800-27147600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
50	chr10:27142800-27147600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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