Variant report

Variant	rs17816551
Chromosome Location	chr10:27082481-27082482
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10159978	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10829072	0.82[ASN][1000 genomes]
rs10829083	0.98[ASN][1000 genomes]
rs10829088	0.98[ASN][1000 genomes]
rs11015266	1.00[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs11015267	0.93[ASN][1000 genomes]
rs11015276	0.93[ASN][1000 genomes]
rs11015298	0.84[ASN][1000 genomes]
rs1115707	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17754383	0.88[CHB][hapmap];1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17754419	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17754431	0.88[CHB][hapmap];1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17816281	1.00[AMR][1000 genomes]
rs17816804	0.89[CHB][hapmap];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2296544	1.00[AMR][1000 genomes]
rs3802611	1.00[AMR][1000 genomes]
rs4628582	0.83[CHB][hapmap];0.84[ASN][1000 genomes]
rs55806416	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7082503	0.84[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs72629715	1.00[AMR][1000 genomes]
rs72629716	1.00[AMR][1000 genomes]
rs72629717	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72629718	1.00[AMR][1000 genomes]
rs72629719	1.00[AMR][1000 genomes]
rs72629720	1.00[AMR][1000 genomes]
rs72629721	1.00[AMR][1000 genomes]
rs72629722	1.00[AMR][1000 genomes]
rs72629723	1.00[AMR][1000 genomes]
rs72629724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72629725	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72629726	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72629727	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72629728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72629729	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72629730	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72629731	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72629733	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72629734	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72629735	1.00[AMR][1000 genomes]
rs72629736	1.00[AMR][1000 genomes]
rs72629737	1.00[AMR][1000 genomes]
rs72629738	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7894246	0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7910026	0.90[CHB][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs899372	0.89[CHB][hapmap];0.84[ASN][1000 genomes]
rs899373	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv933544	chr10:27005220-27111998	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv831812	chr10:27061506-27234267	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv971858	chr10:27066006-27157708	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27069800-27084600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:27070600-27082800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:27070800-27091800	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr10:27071000-27083800	Weak transcription	Fetal Intestine Small	intestine
5	chr10:27071000-27084600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:27071200-27089000	Weak transcription	Lung	lung
7	chr10:27071200-27089600	Weak transcription	Spleen	Spleen
8	chr10:27071400-27088600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr10:27073000-27087000	Weak transcription	Thymus	Thymus
10	chr10:27073000-27088200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr10:27074800-27083200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:27074800-27091600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr10:27074800-27091800	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr10:27075000-27087000	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr10:27075000-27087000	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr10:27075000-27089400	Weak transcription	Left Ventricle	heart
17	chr10:27075000-27091600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr10:27075000-27104600	Weak transcription	Esophagus	oesophagus
19	chr10:27075200-27088400	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr10:27078800-27082800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr10:27079800-27085000	Weak transcription	Primary hematopoietic stem cells	blood
22	chr10:27079800-27091800	Weak transcription	Fetal Heart	heart
23	chr10:27079800-27092200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr10:27080000-27082800	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr10:27080400-27082600	Enhancers	Brain Substantia Nigra	brain
26	chr10:27080400-27082800	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr10:27080400-27083000	Enhancers	Brain Anterior Caudate	brain
28	chr10:27080600-27082600	Enhancers	Brain Hippocampus Middle	brain
29	chr10:27080600-27082800	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr10:27080600-27083200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr10:27080800-27082600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr10:27080800-27082600	Enhancers	GM12878-XiMat	blood
33	chr10:27080800-27082800	Enhancers	Duodenum Smooth Muscle	Duodenum
34	chr10:27080800-27083600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr10:27080800-27092000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr10:27081000-27082600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr10:27081200-27082600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr10:27081200-27082800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr10:27081600-27082600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr10:27081600-27082800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
41	chr10:27081600-27082800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr10:27081800-27082600	Enhancers	Skeletal Muscle Male	skeletal muscle
43	chr10:27081800-27082800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
44	chr10:27081800-27082800	Enhancers	Brain Cingulate Gyrus	brain
45	chr10:27081800-27082800	Enhancers	Brain Inferior Temporal Lobe	brain
46	chr10:27081800-27082800	Enhancers	NHDF-Ad	bronchial
47	chr10:27081800-27083000	Enhancers	Primary T helper naive cells from peripheral blood	blood
48	chr10:27081800-27083200	Enhancers	Primary B cells from peripheral blood	blood
49	chr10:27082200-27082600	Enhancers	Primary B cells from cord blood	blood
50	chr10:27082200-27082600	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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