Variant report

Variant	rs55806416
Chromosome Location	chr10:27147765-27147766
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:27144252..27146067-chr10:27147473..27149312,2	K562	blood:
2	chr10:27140612..27143943-chr10:27145359..27148469,3	K562	blood:
3	chr10:26985820..26988072-chr10:27146146..27148429,3	MCF-7	breast:
4	chr10:27147488..27149216-chr14:104802775..104805122,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000148459	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10159978	0.86[ASN][1000 genomes]
rs10829083	0.86[ASN][1000 genomes]
rs10829088	0.86[ASN][1000 genomes]
rs11015266	0.81[ASN][1000 genomes]
rs11015267	0.82[ASN][1000 genomes]
rs11015276	0.82[ASN][1000 genomes]
rs1115707	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17754419	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17816551	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2296544	0.82[ASN][1000 genomes]
rs7082503	0.88[ASN][1000 genomes]
rs72629717	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72629724	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72629725	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72629726	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72629727	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72629728	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72629730	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72629731	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72629733	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72629734	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72629738	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7894246	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7910026	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs899373	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831812	chr10:27061506-27234267	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv971858	chr10:27066006-27157708	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27095600-27148800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:27129400-27148200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr10:27133600-27148200	Weak transcription	Aorta	Aorta
4	chr10:27135800-27148200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr10:27142600-27148000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr10:27143600-27148000	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr10:27143600-27148200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr10:27144600-27148200	Weak transcription	Small Intestine	intestine
9	chr10:27145400-27147800	Enhancers	Adipose Nuclei	Adipose
10	chr10:27145400-27148000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr10:27145800-27147800	Enhancers	Liver	Liver
12	chr10:27146000-27147800	Weak transcription	Brain Substantia Nigra	brain
13	chr10:27146400-27148200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:27146400-27150400	Active TSS	GM12878-XiMat	blood
15	chr10:27146600-27148200	Enhancers	Fetal Intestine Small	intestine
16	chr10:27146600-27148200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr10:27146600-27148600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
18	chr10:27146600-27149000	Flanking Active TSS	Primary B cells from cord blood	blood
19	chr10:27146800-27147800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr10:27146800-27147800	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr10:27146800-27147800	Enhancers	Brain Germinal Matrix	brain
22	chr10:27146800-27147800	Flanking Active TSS	Fetal Heart	heart
23	chr10:27146800-27147800	Enhancers	HSMM	muscle
24	chr10:27146800-27148200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr10:27146800-27148200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr10:27146800-27148400	Flanking Active TSS	Primary hematopoietic stem cells	blood
27	chr10:27146800-27148600	Flanking Active TSS	Dnd41	blood
28	chr10:27146800-27149000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr10:27147000-27147800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr10:27147000-27147800	Enhancers	Brain Cingulate Gyrus	brain
31	chr10:27147000-27147800	Enhancers	Fetal Brain Male	brain
32	chr10:27147000-27148000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr10:27147000-27148200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
34	chr10:27147000-27148200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr10:27147000-27148200	Enhancers	Placenta Amnion	Placenta Amnion
36	chr10:27147000-27148200	Flanking Active TSS	Osteobl	bone
37	chr10:27147000-27148400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
38	chr10:27147000-27148400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
39	chr10:27147000-27148400	Flanking Active TSS	NH-A	brain
40	chr10:27147000-27148600	Flanking Active TSS	Primary T cells from cord blood	blood
41	chr10:27147000-27148800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
42	chr10:27147000-27149000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr10:27147000-27150400	Active TSS	Right Ventricle	heart
44	chr10:27147000-27150600	Active TSS	Pancreatic Islets	Pancreatic Islet
45	chr10:27147000-27150800	Active TSS	Thymus	Thymus
46	chr10:27147200-27147800	Active TSS	HUES64 Cell Line	embryonic stem cell
47	chr10:27147200-27147800	Enhancers	Rectal Mucosa Donor 31	rectum
48	chr10:27147200-27148000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr10:27147200-27148000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
50	chr10:27147200-27148000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain

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