Variant report

Variant	rs72629717
Chromosome Location	chr10:27034700-27034701
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27034198..27037050-chr10:27043769..27046738,3	K562	blood:
2	chr10:27025829..27027714-chr10:27034224..27036690,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10159978	0.89[ASN][1000 genomes]
rs10829083	0.89[ASN][1000 genomes]
rs10829088	0.89[ASN][1000 genomes]
rs11015266	0.97[ASN][1000 genomes]
rs11015267	0.98[ASN][1000 genomes]
rs11015276	0.98[ASN][1000 genomes]
rs1115707	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17754383	1.00[AMR][1000 genomes]
rs17754419	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17754431	1.00[AMR][1000 genomes]
rs17816281	1.00[AMR][1000 genomes]
rs17816551	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17816804	1.00[AMR][1000 genomes]
rs2296544	1.00[AMR][1000 genomes]
rs3802611	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs55806416	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7082503	0.87[ASN][1000 genomes]
rs72629715	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72629716	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72629718	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72629719	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72629720	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72629721	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72629722	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72629723	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72629724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72629725	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72629726	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72629727	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72629728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72629729	1.00[AMR][1000 genomes]
rs72629730	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72629731	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72629733	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72629734	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72629735	1.00[AMR][1000 genomes]
rs72629736	1.00[AMR][1000 genomes]
rs72629737	1.00[AMR][1000 genomes]
rs72629738	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7894246	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7910026	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs899373	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv933544	chr10:27005220-27111998	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26988000-27069600	Weak transcription	Colon Smooth Muscle	Colon
2	chr10:26994400-27040800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr10:26997600-27054400	Weak transcription	Fetal Brain Male	brain
4	chr10:26999800-27037400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr10:27001200-27041200	Strong transcription	Fetal Thymus	thymus
6	chr10:27001800-27041200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr10:27007800-27041200	Strong transcription	Dnd41	blood
8	chr10:27011200-27047400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr10:27012000-27044400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr10:27015200-27035400	Weak transcription	Stomach Mucosa	stomach
11	chr10:27018000-27036400	Strong transcription	K562	blood
12	chr10:27018000-27038800	Strong transcription	Rectal Mucosa Donor 29	rectum
13	chr10:27019800-27036000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:27020400-27035400	Strong transcription	Primary T cells from cord blood	blood
15	chr10:27021600-27069600	Weak transcription	Esophagus	oesophagus
16	chr10:27023400-27040600	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr10:27023400-27057800	Weak transcription	Gastric	stomach
18	chr10:27023400-27070000	Weak transcription	Pancreas	Pancrea
19	chr10:27023800-27040600	Strong transcription	Duodenum Mucosa	Duodenum
20	chr10:27024000-27041000	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr10:27024000-27047600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr10:27024000-27048000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr10:27024200-27036600	Strong transcription	A549	lung
24	chr10:27024200-27048600	Weak transcription	Fetal Heart	heart
25	chr10:27024400-27041000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr10:27024600-27041000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr10:27024800-27040800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr10:27024800-27048000	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr10:27025000-27054200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr10:27025200-27035200	Weak transcription	Fetal Kidney	kidney
31	chr10:27025600-27069600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr10:27025800-27039200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr10:27025800-27044400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr10:27025800-27068200	Weak transcription	Spleen	Spleen
35	chr10:27025800-27070800	Weak transcription	Aorta	Aorta
36	chr10:27026000-27036000	Weak transcription	Primary hematopoietic stem cells	blood
37	chr10:27026000-27069600	Weak transcription	Brain Angular Gyrus	brain
38	chr10:27027000-27034800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr10:27027000-27035000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr10:27027200-27037000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr10:27027200-27037400	Strong transcription	HMEC	breast
42	chr10:27027200-27043600	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr10:27027400-27044000	Strong transcription	Primary monocytes fromperipheralblood	blood
44	chr10:27027400-27069400	Weak transcription	Brain Hippocampus Middle	brain
45	chr10:27027600-27035600	Strong transcription	Fetal Intestine Large	intestine
46	chr10:27027800-27069600	Weak transcription	Rectal Smooth Muscle	rectum
47	chr10:27028000-27036800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr10:27028200-27036600	Strong transcription	Duodenum Smooth Muscle	Duodenum
49	chr10:27028200-27044400	Weak transcription	Brain Cingulate Gyrus	brain
50	chr10:27028200-27068600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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