Variant report

Variant	rs72629736
Chromosome Location	chr10:27138302-27138303
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:27135807..27140100-chr10:27147231..27150692,4	MCF-7	breast:
2	chr10:27137537..27139722-chr10:27142265..27144815,2	MCF-7	breast:
3	chr10:27137519..27140473-chr10:27148329..27151110,2	K562	blood:
4	chr10:27135636..27137752-chr10:27138213..27139984,2	MCF-7	breast:
5	chr10:27020685..27022973-chr10:27138065..27140730,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136754	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10829072	0.93[ASN][1000 genomes]
rs11015298	0.90[ASN][1000 genomes]
rs1115707	1.00[AMR][1000 genomes]
rs12415181	0.87[EUR][1000 genomes]
rs12416351	0.87[EUR][1000 genomes]
rs12571068	0.87[EUR][1000 genomes]
rs12571996	0.87[EUR][1000 genomes]
rs12572166	1.00[EUR][1000 genomes]
rs17754383	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17754419	1.00[AMR][1000 genomes]
rs17754431	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17816281	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17816551	1.00[AMR][1000 genomes]
rs17816804	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1815322	0.89[EUR][1000 genomes]
rs2296544	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2477924	0.89[EUR][1000 genomes]
rs2477926	0.89[EUR][1000 genomes]
rs2477927	0.89[EUR][1000 genomes]
rs3802611	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4628582	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72629715	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72629716	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72629717	1.00[AMR][1000 genomes]
rs72629718	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72629719	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72629720	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72629721	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72629722	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72629723	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72629724	1.00[AMR][1000 genomes]
rs72629725	1.00[AMR][1000 genomes]
rs72629726	1.00[AMR][1000 genomes]
rs72629727	1.00[AMR][1000 genomes]
rs72629728	1.00[AMR][1000 genomes]
rs72629729	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72629730	1.00[AMR][1000 genomes]
rs72629731	1.00[AMR][1000 genomes]
rs72629733	1.00[AMR][1000 genomes]
rs72629734	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs72629735	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72629737	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72629738	1.00[AMR][1000 genomes]
rs72629739	1.00[EUR][1000 genomes]
rs72629740	1.00[EUR][1000 genomes]
rs72629742	1.00[EUR][1000 genomes]
rs72629743	1.00[EUR][1000 genomes]
rs72629744	1.00[EUR][1000 genomes]
rs72629745	1.00[EUR][1000 genomes]
rs72629746	1.00[EUR][1000 genomes]
rs72629747	1.00[EUR][1000 genomes]
rs72629749	1.00[EUR][1000 genomes]
rs72629750	1.00[EUR][1000 genomes]
rs899372	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831812	chr10:27061506-27234267	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv971858	chr10:27066006-27157708	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27095000-27138600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr10:27095600-27148800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:27111800-27147000	Weak transcription	Fetal Intestine Large	intestine
4	chr10:27119600-27147200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr10:27120600-27142600	Weak transcription	HepG2	liver
6	chr10:27122600-27143400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr10:27123000-27145000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr10:27124400-27146200	Weak transcription	Fetal Muscle Leg	muscle
9	chr10:27126600-27140000	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr10:27128000-27139600	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr10:27128000-27143200	Weak transcription	Osteobl	bone
12	chr10:27129200-27142600	Weak transcription	Right Ventricle	heart
13	chr10:27129400-27142000	Weak transcription	Lung	lung
14	chr10:27129400-27146000	Weak transcription	Pancreas	Pancrea
15	chr10:27129400-27146400	Weak transcription	Gastric	stomach
16	chr10:27129400-27146600	Weak transcription	Esophagus	oesophagus
17	chr10:27129400-27147200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr10:27129400-27148200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr10:27129600-27146600	Weak transcription	Stomach Smooth Muscle	stomach
20	chr10:27130000-27140000	Weak transcription	Fetal Lung	lung
21	chr10:27130000-27143800	Weak transcription	Brain Angular Gyrus	brain
22	chr10:27130200-27140400	Weak transcription	Brain Anterior Caudate	brain
23	chr10:27130200-27143000	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr10:27130200-27143600	Weak transcription	NHDF-Ad	bronchial
25	chr10:27130200-27145600	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr10:27130800-27145000	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr10:27131200-27140200	Weak transcription	Small Intestine	intestine
28	chr10:27131200-27143200	Weak transcription	Stomach Mucosa	stomach
29	chr10:27131200-27143400	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr10:27131200-27146000	Weak transcription	Right Atrium	heart
31	chr10:27131600-27145000	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr10:27132000-27142800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr10:27133200-27140000	Weak transcription	Duodenum Mucosa	Duodenum
34	chr10:27133600-27146400	Weak transcription	Psoas Muscle	Psoas
35	chr10:27133600-27148200	Weak transcription	Aorta	Aorta
36	chr10:27133800-27139600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr10:27134000-27139800	Weak transcription	Brain Cingulate Gyrus	brain
38	chr10:27134000-27140000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr10:27134000-27140200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr10:27134000-27140400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr10:27134000-27143200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr10:27134000-27143600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr10:27134000-27145000	Weak transcription	Fetal Thymus	thymus
44	chr10:27134000-27145400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr10:27134000-27145400	Weak transcription	Adipose Nuclei	Adipose
46	chr10:27134000-27146800	Weak transcription	Brain Hippocampus Middle	brain
47	chr10:27134200-27140600	Weak transcription	Primary hematopoietic stem cells	blood
48	chr10:27134200-27145400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr10:27134400-27140000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr10:27134400-27140000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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