Variant report

Variant	rs17816281
Chromosome Location	chr10:27023776-27023777
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27023145..27024775-chr10:27148207..27150009,2	MCF-7	breast:
2	chr10:26986198..26989615-chr10:27022506..27024765,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136754	Chromatin interaction
ENSG00000148459	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1115707	1.00[AMR][1000 genomes]
rs12572166	0.89[EUR][1000 genomes]
rs17754383	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17754419	1.00[AMR][1000 genomes]
rs17754431	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17816551	1.00[AMR][1000 genomes]
rs17816804	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2296544	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3802611	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4628582	0.89[EUR][1000 genomes]
rs72629715	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72629716	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72629717	1.00[AMR][1000 genomes]
rs72629718	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72629719	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72629720	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72629721	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72629722	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72629723	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72629724	1.00[AMR][1000 genomes]
rs72629725	1.00[AMR][1000 genomes]
rs72629726	1.00[AMR][1000 genomes]
rs72629727	1.00[AMR][1000 genomes]
rs72629728	1.00[AMR][1000 genomes]
rs72629729	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72629730	1.00[AMR][1000 genomes]
rs72629731	1.00[AMR][1000 genomes]
rs72629733	1.00[AMR][1000 genomes]
rs72629734	1.00[AMR][1000 genomes]
rs72629735	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72629736	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72629737	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72629738	1.00[AMR][1000 genomes]
rs72629739	0.89[EUR][1000 genomes]
rs72629740	0.89[EUR][1000 genomes]
rs72629742	0.89[EUR][1000 genomes]
rs72629743	0.89[EUR][1000 genomes]
rs72629744	0.89[EUR][1000 genomes]
rs72629745	0.89[EUR][1000 genomes]
rs72629746	0.89[EUR][1000 genomes]
rs72629747	0.89[EUR][1000 genomes]
rs72629749	0.89[EUR][1000 genomes]
rs72629750	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv933544	chr10:27005220-27111998	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv2761585	chr10:27010701-27026012	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26987600-27024400	Weak transcription	Fetal Kidney	kidney
2	chr10:26987800-27031200	Weak transcription	NHDF-Ad	bronchial
3	chr10:26988000-27069600	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:26989400-27031000	Weak transcription	Small Intestine	intestine
5	chr10:26994400-27040800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:26995800-27026600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr10:26996000-27026600	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr10:26996200-27026200	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr10:26996200-27028000	Weak transcription	Psoas Muscle	Psoas
10	chr10:26997200-27024400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr10:26997600-27054400	Weak transcription	Fetal Brain Male	brain
12	chr10:26999800-27037400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr10:27001000-27031800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr10:27001200-27041200	Strong transcription	Fetal Thymus	thymus
15	chr10:27001800-27041200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr10:27004200-27031200	Weak transcription	Hela-S3	cervix
17	chr10:27006200-27023800	Weak transcription	NHLF	lung
18	chr10:27007800-27041200	Strong transcription	Dnd41	blood
19	chr10:27009600-27032200	Strong transcription	Fetal Muscle Trunk	muscle
20	chr10:27010000-27034600	Strong transcription	Thymus	Thymus
21	chr10:27011000-27024200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr10:27011000-27024200	Weak transcription	Aorta	Aorta
23	chr10:27011000-27027000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr10:27011200-27026200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr10:27011200-27026400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr10:27011200-27047400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr10:27011400-27027000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr10:27012000-27044400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr10:27014800-27024200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr10:27014800-27024200	Weak transcription	Placenta	Placenta
31	chr10:27015000-27024000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr10:27015200-27035400	Weak transcription	Stomach Mucosa	stomach
33	chr10:27015800-27032400	Strong transcription	Fetal Stomach	stomach
34	chr10:27016000-27027600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr10:27018000-27025800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr10:27018000-27036400	Strong transcription	K562	blood
37	chr10:27018000-27038800	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr10:27018200-27025200	Strong transcription	HSMM	muscle
39	chr10:27018200-27025800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr10:27019200-27026000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr10:27019400-27025800	Strong transcription	Skeletal Muscle Male	skeletal muscle
42	chr10:27019400-27026000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr10:27019400-27027200	Strong transcription	Fetal Muscle Leg	muscle
44	chr10:27019600-27025400	Strong transcription	Duodenum Smooth Muscle	Duodenum
45	chr10:27019600-27025400	Strong transcription	Lung	lung
46	chr10:27019600-27025600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr10:27019600-27025800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr10:27019600-27026000	Strong transcription	Stomach Smooth Muscle	stomach
49	chr10:27019800-27036000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr10:27020200-27026000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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