Variant report

Variant	rs12572166
Chromosome Location	chr10:27172537-27172538
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12415181	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12416351	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12571068	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12571996	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17754383	1.00[EUR][1000 genomes]
rs17754431	1.00[EUR][1000 genomes]
rs17816281	0.89[EUR][1000 genomes]
rs17816804	1.00[EUR][1000 genomes]
rs1815322	0.89[EUR][1000 genomes]
rs2296544	1.00[EUR][1000 genomes]
rs2477924	0.89[EUR][1000 genomes]
rs2477926	0.89[EUR][1000 genomes]
rs2477927	0.89[EUR][1000 genomes]
rs3802611	1.00[EUR][1000 genomes]
rs4628582	1.00[EUR][1000 genomes]
rs72629715	1.00[EUR][1000 genomes]
rs72629716	1.00[EUR][1000 genomes]
rs72629718	1.00[EUR][1000 genomes]
rs72629719	1.00[EUR][1000 genomes]
rs72629720	1.00[EUR][1000 genomes]
rs72629721	1.00[EUR][1000 genomes]
rs72629722	1.00[EUR][1000 genomes]
rs72629723	1.00[EUR][1000 genomes]
rs72629729	1.00[EUR][1000 genomes]
rs72629735	1.00[EUR][1000 genomes]
rs72629736	1.00[EUR][1000 genomes]
rs72629737	1.00[EUR][1000 genomes]
rs72629739	1.00[EUR][1000 genomes]
rs72629740	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72629742	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72629743	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72629744	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72629745	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72629746	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72629747	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72629748	0.99[ASN][1000 genomes]
rs72629749	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72629750	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs899372	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831812	chr10:27061506-27234267	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2757376	chr10:27160932-27229993	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2759740	chr10:27160932-27229993	Strong transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv430140	chr10:27165095-27227681	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv2752390	chr10:27165095-27241780	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27170800-27183200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:27171200-27172800	Weak transcription	A549	lung
3	chr10:27171400-27181600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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