Variant report

Variant	rs10829057
Chromosome Location	chr10:27048710-27048711
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:27037937..27039490-chr10:27047558..27049695,2	MCF-7	breast:
2	chr10:27047313..27050355-chr10:27148384..27151067,3	K562	blood:
3	chr10:27038672..27041354-chr10:27047222..27050106,2	K562	blood:

Variant related genes	Relation type
ENSG00000136754	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10159978	0.88[AFR][1000 genomes]
rs10764642	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10764644	0.87[AFR][1000 genomes]
rs10829055	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10829056	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10829059	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10829061	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10829062	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10829068	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10829069	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10829072	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs10829073	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10829074	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10829079	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10829085	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10829107	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11015262	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11015266	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11015267	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11015276	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11015283	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11015298	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs11015300	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11015308	0.87[EUR][1000 genomes]
rs11015313	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11015340	0.86[EUR][1000 genomes]
rs11015343	0.88[EUR][1000 genomes]
rs12243481	0.87[AFR][1000 genomes]
rs12247684	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12256219	0.82[AFR][1000 genomes]
rs12265625	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12267091	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12358409	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1408530	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16927341	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28538332	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs718827	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv933544	chr10:27005220-27111998	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26988000-27069600	Weak transcription	Colon Smooth Muscle	Colon
2	chr10:26997600-27054400	Weak transcription	Fetal Brain Male	brain
3	chr10:27021600-27069600	Weak transcription	Esophagus	oesophagus
4	chr10:27023400-27057800	Weak transcription	Gastric	stomach
5	chr10:27023400-27070000	Weak transcription	Pancreas	Pancrea
6	chr10:27025000-27054200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr10:27025600-27069600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:27025800-27068200	Weak transcription	Spleen	Spleen
9	chr10:27025800-27070800	Weak transcription	Aorta	Aorta
10	chr10:27026000-27069600	Weak transcription	Brain Angular Gyrus	brain
11	chr10:27027400-27069400	Weak transcription	Brain Hippocampus Middle	brain
12	chr10:27027800-27069600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr10:27028200-27068600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr10:27028400-27069800	Weak transcription	NHLF	lung
15	chr10:27028600-27051600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr10:27028600-27062200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr10:27029600-27051200	Weak transcription	Brain Anterior Caudate	brain
18	chr10:27029800-27069600	Weak transcription	HSMMtube	muscle
19	chr10:27031200-27049600	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr10:27031400-27049800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr10:27032000-27068200	Weak transcription	Small Intestine	intestine
22	chr10:27032000-27069600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr10:27032400-27069400	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr10:27032400-27069600	Weak transcription	Lung	lung
25	chr10:27032600-27053400	Weak transcription	Left Ventricle	heart
26	chr10:27032600-27069800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr10:27032800-27060600	Weak transcription	Brain Substantia Nigra	brain
28	chr10:27033200-27064000	Weak transcription	HepG2	liver
29	chr10:27033600-27051000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr10:27033600-27069200	Weak transcription	Psoas Muscle	Psoas
31	chr10:27034000-27056400	Weak transcription	Fetal Brain Female	brain
32	chr10:27034000-27061800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr10:27034000-27069000	Weak transcription	Colonic Mucosa	Colon
34	chr10:27034000-27069600	Weak transcription	Ovary	ovary
35	chr10:27034000-27069800	Weak transcription	Stomach Smooth Muscle	stomach
36	chr10:27034200-27049800	Weak transcription	Fetal Stomach	stomach
37	chr10:27034400-27069600	Weak transcription	Right Ventricle	heart
38	chr10:27034600-27049200	Weak transcription	Thymus	Thymus
39	chr10:27034600-27057200	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr10:27034800-27049400	Weak transcription	Fetal Intestine Small	intestine
41	chr10:27035600-27060400	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr10:27036600-27049800	Weak transcription	Fetal Kidney	kidney
43	chr10:27036600-27053200	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr10:27036800-27068400	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr10:27037400-27062200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr10:27040000-27059200	Weak transcription	Brain Germinal Matrix	brain
47	chr10:27040800-27051200	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr10:27040800-27052800	Weak transcription	Fetal Muscle Trunk	muscle
49	chr10:27040800-27053600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr10:27040800-27060800	Weak transcription	Fetal Muscle Leg	muscle

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