Variant report

Variant	rs12256219
Chromosome Location	chr10:27106219-27106220
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27098834..27102498-chr10:27103196..27108040,4	K562	blood:

Extended variants
information (count: 166 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:162)

rs_ID	r²[population]
rs10082354	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10082408	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10082409	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10082516	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10159978	0.92[AFR][1000 genomes]
rs10437433	0.85[EUR][1000 genomes]
rs10741122	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10764642	0.84[AFR][1000 genomes]
rs10764644	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10764645	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10764646	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10764647	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10764648	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10764649	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10764650	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10764651	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10764652	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10764653	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10764654	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10764655	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10764656	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10764657	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10764658	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10829057	0.82[AFR][1000 genomes]
rs10829059	0.85[AFR][1000 genomes]
rs10829061	0.83[AFR][1000 genomes]
rs10829062	0.85[AFR][1000 genomes]
rs10829065	0.96[ASN][1000 genomes]
rs10829068	0.88[AFR][1000 genomes]
rs10829069	0.90[AFR][1000 genomes]
rs10829072	0.90[AFR][1000 genomes]
rs10829073	0.92[AFR][1000 genomes]
rs10829074	0.92[AFR][1000 genomes]
rs10829076	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10829077	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10829078	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10829079	0.92[AFR][1000 genomes]
rs10829080	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10829081	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10829082	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10829084	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10829085	0.91[AFR][1000 genomes]
rs10829086	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10829087	0.86[EUR][1000 genomes]
rs10829089	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10829090	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10829091	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10829092	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10829093	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10829094	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10829095	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10829096	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10829097	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10829098	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10829099	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10829100	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10829101	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10829102	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10829103	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10829105	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10829106	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10829108	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10829109	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10829110	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10829111	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10829112	0.81[EUR][1000 genomes]
rs10829113	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10829114	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10829115	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10829116	0.85[EUR][1000 genomes]
rs10829117	0.85[EUR][1000 genomes]
rs10829118	0.85[EUR][1000 genomes]
rs10829119	0.85[EUR][1000 genomes]
rs10829120	0.85[EUR][1000 genomes]
rs10829121	0.85[EUR][1000 genomes]
rs10829124	0.82[EUR][1000 genomes]
rs10829125	0.85[EUR][1000 genomes]
rs11015260	0.89[ASN][1000 genomes]
rs11015261	0.92[ASN][1000 genomes]
rs11015267	0.80[AFR][1000 genomes]
rs11015272	0.94[ASN][1000 genomes]
rs11015276	0.85[AFR][1000 genomes]
rs11015279	0.94[ASN][1000 genomes]
rs11015280	0.94[ASN][1000 genomes]
rs11015283	0.84[AFR][1000 genomes]
rs11015284	0.96[ASN][1000 genomes]
rs11015286	0.96[ASN][1000 genomes]
rs11015289	0.96[ASN][1000 genomes]
rs11015291	0.95[ASN][1000 genomes]
rs11015298	0.90[AFR][1000 genomes]
rs11015300	0.88[AFR][1000 genomes]
rs11015305	1.00[ASN][1000 genomes]
rs11015309	1.00[ASN][1000 genomes]
rs11015313	0.92[AFR][1000 genomes]
rs11015320	1.00[ASN][1000 genomes]
rs11015321	1.00[ASN][1000 genomes]
rs11015322	1.00[ASN][1000 genomes]
rs11015324	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11015327	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11015328	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11015329	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11015330	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11015333	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11015334	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11015335	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11015336	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11015337	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11015341	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11015342	0.85[EUR][1000 genomes]
rs11015344	0.83[EUR][1000 genomes]
rs11015345	0.85[EUR][1000 genomes]
rs11015346	0.85[EUR][1000 genomes]
rs11015347	0.85[EUR][1000 genomes]
rs11015349	0.91[ASN][1000 genomes]
rs12243481	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12251277	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12267091	0.85[AFR][1000 genomes]
rs12269511	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12356134	1.00[ASN][1000 genomes]
rs12357198	0.91[ASN][1000 genomes]
rs12358409	0.88[AFR][1000 genomes]
rs12358643	0.80[EUR][1000 genomes]
rs12359532	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12413375	0.83[EUR][1000 genomes]
rs12414600	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1408530	0.80[AFR][1000 genomes]
rs1409129	0.85[EUR][1000 genomes]
rs17754347	0.94[ASN][1000 genomes]
rs17754556	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17754586	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17816671	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2225015	0.85[EUR][1000 genomes]
rs28538332	0.87[AFR][1000 genomes]
rs3758440	0.94[ASN][1000 genomes]
rs4372343	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4463751	0.96[ASN][1000 genomes]
rs56822359	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67016888	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7068321	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7073300	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7073329	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7075503	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7076986	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7078094	0.92[ASN][1000 genomes]
rs7078643	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7090495	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7094688	0.96[ASN][1000 genomes]
rs7096454	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7097837	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs718825	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs718826	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs718827	0.92[AFR][1000 genomes]
rs718828	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7904880	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7914180	1.00[ASN][1000 genomes]
rs7919153	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7919926	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7923125	1.00[ASN][1000 genomes]
rs9299834	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9664597	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9804217	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9804395	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv933544	chr10:27005220-27111998	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv831812	chr10:27061506-27234267	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv971858	chr10:27066006-27157708	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27085600-27119000	Weak transcription	Fetal Lung	lung
2	chr10:27086600-27110400	Weak transcription	Fetal Intestine Large	intestine
3	chr10:27091800-27113200	Weak transcription	Placenta	Placenta
4	chr10:27093400-27112400	Weak transcription	Left Ventricle	heart
5	chr10:27094000-27108000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:27094600-27108400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr10:27094600-27111200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr10:27094800-27108000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:27094800-27111200	Weak transcription	Ovary	ovary
10	chr10:27095000-27130600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr10:27095000-27138600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr10:27095200-27106600	Weak transcription	Osteobl	bone
13	chr10:27095200-27110800	Weak transcription	Primary hematopoietic stem cells	blood
14	chr10:27095200-27119000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr10:27095400-27110800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr10:27095400-27111200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr10:27095400-27113000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr10:27095400-27116200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr10:27095400-27129800	Weak transcription	NHEK	skin
20	chr10:27095600-27107800	Weak transcription	Brain Hippocampus Middle	brain
21	chr10:27095600-27109800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr10:27095600-27111000	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr10:27095600-27114600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr10:27095600-27115400	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr10:27095600-27129000	Weak transcription	Right Atrium	heart
26	chr10:27095600-27132600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr10:27095600-27148800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr10:27095800-27113400	Weak transcription	Duodenum Mucosa	Duodenum
29	chr10:27096800-27108200	Weak transcription	Brain Substantia Nigra	brain
30	chr10:27096800-27108200	Weak transcription	Fetal Thymus	thymus
31	chr10:27096800-27110800	Weak transcription	Dnd41	blood
32	chr10:27096800-27112400	Weak transcription	Gastric	stomach
33	chr10:27097200-27120000	Weak transcription	HepG2	liver
34	chr10:27097400-27108800	Weak transcription	Primary T cells from cord blood	blood
35	chr10:27097600-27109800	Weak transcription	Fetal Stomach	stomach
36	chr10:27097800-27110400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr10:27099000-27113800	Weak transcription	Fetal Brain Female	brain
38	chr10:27099200-27107800	Weak transcription	Brain Anterior Caudate	brain
39	chr10:27099200-27108800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr10:27099800-27128800	Weak transcription	K562	blood
41	chr10:27101000-27108800	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr10:27101800-27107400	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr10:27101800-27129000	Weak transcription	Stomach Mucosa	stomach
44	chr10:27103200-27107800	Weak transcription	Primary B cells from cord blood	blood
45	chr10:27104000-27108800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr10:27104000-27109800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr10:27104400-27110800	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr10:27104600-27106800	Enhancers	Primary T helper cells PMA-I stimulated	--
49	chr10:27104800-27119200	Weak transcription	Esophagus	oesophagus
50	chr10:27104800-27129200	Weak transcription	Colonic Mucosa	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links