Variant report

Variant	rs11015349
Chromosome Location	chr10:27147230-27147231
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27140612..27143943-chr10:27145359..27148469,3	K562	blood:
2	chr10:26985820..26988072-chr10:27146146..27148429,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000148459	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10764644	0.86[ASN][1000 genomes]
rs10764645	0.87[ASN][1000 genomes]
rs10764654	0.96[ASN][1000 genomes]
rs10829065	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10829076	0.91[ASN][1000 genomes]
rs10829099	0.96[ASN][1000 genomes]
rs10829103	0.96[ASN][1000 genomes]
rs10829115	0.93[ASN][1000 genomes]
rs11015260	0.80[ASN][1000 genomes]
rs11015261	0.83[ASN][1000 genomes]
rs11015272	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11015279	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11015280	0.85[ASN][1000 genomes]
rs11015284	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11015286	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11015289	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11015291	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11015305	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11015309	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11015320	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11015321	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11015322	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12243481	0.87[ASN][1000 genomes]
rs12256219	0.91[ASN][1000 genomes]
rs12356134	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12357198	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17754347	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3758440	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4463751	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7078094	0.83[ASN][1000 genomes]
rs7094688	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72629732	0.82[AMR][1000 genomes]
rs7914180	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7923125	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9299834	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831812	chr10:27061506-27234267	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv971858	chr10:27066006-27157708	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27095600-27148800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:27129400-27148200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr10:27133600-27148200	Weak transcription	Aorta	Aorta
4	chr10:27135800-27148200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr10:27142600-27148000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr10:27142800-27147400	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr10:27142800-27147600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr10:27142800-27147600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr10:27143000-27147600	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr10:27143600-27148000	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr10:27143600-27148200	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr10:27144600-27147600	Enhancers	Primary T cells fromperipheralblood	blood
13	chr10:27144600-27148200	Weak transcription	Small Intestine	intestine
14	chr10:27144800-27147600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr10:27145000-27147600	Enhancers	Duodenum Smooth Muscle	Duodenum
16	chr10:27145000-27147600	Enhancers	Fetal Thymus	thymus
17	chr10:27145400-27147800	Enhancers	Adipose Nuclei	Adipose
18	chr10:27145400-27148000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr10:27145800-27147600	Weak transcription	Ovary	ovary
20	chr10:27145800-27147800	Enhancers	Liver	Liver
21	chr10:27146000-27147400	Enhancers	Left Ventricle	heart
22	chr10:27146000-27147400	Enhancers	Lung	lung
23	chr10:27146000-27147400	Enhancers	Right Atrium	heart
24	chr10:27146000-27147600	Weak transcription	Brain Angular Gyrus	brain
25	chr10:27146000-27147800	Weak transcription	Brain Substantia Nigra	brain
26	chr10:27146200-27147400	Enhancers	Fetal Muscle Leg	muscle
27	chr10:27146400-27147400	Enhancers	Gastric	stomach
28	chr10:27146400-27148200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr10:27146400-27150400	Active TSS	GM12878-XiMat	blood
30	chr10:27146600-27147400	Enhancers	Esophagus	oesophagus
31	chr10:27146600-27147600	Enhancers	NHDF-Ad	bronchial
32	chr10:27146600-27148200	Enhancers	Fetal Intestine Small	intestine
33	chr10:27146600-27148200	Weak transcription	Fetal Muscle Trunk	muscle
34	chr10:27146600-27148600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
35	chr10:27146600-27149000	Flanking Active TSS	Primary B cells from cord blood	blood
36	chr10:27146800-27147400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr10:27146800-27147400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr10:27146800-27147400	Enhancers	HUVEC	blood vessel
39	chr10:27146800-27147600	Enhancers	Brain Hippocampus Middle	brain
40	chr10:27146800-27147600	Enhancers	Fetal Kidney	kidney
41	chr10:27146800-27147800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr10:27146800-27147800	Enhancers	Cortex derived primary cultured neurospheres	brain
43	chr10:27146800-27147800	Enhancers	Brain Germinal Matrix	brain
44	chr10:27146800-27147800	Flanking Active TSS	Fetal Heart	heart
45	chr10:27146800-27147800	Enhancers	HSMM	muscle
46	chr10:27146800-27148200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr10:27146800-27148200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
48	chr10:27146800-27148400	Flanking Active TSS	Primary hematopoietic stem cells	blood
49	chr10:27146800-27148600	Flanking Active TSS	Dnd41	blood
50	chr10:27146800-27149000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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