Variant report

Variant	rs12357198
Chromosome Location	chr10:27142382-27142383
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:27131106..27133856-chr10:27141673..27144502,2	MCF-7	breast:
2	chr10:27134235..27137117-chr10:27142370..27144378,2	K562	blood:
3	chr10:27142352..27145740-chr10:27147848..27150429,5	MCF-7	breast:
4	chr10:27140612..27143943-chr10:27145359..27148469,3	K562	blood:
5	chr10:27137537..27139722-chr10:27142265..27144815,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136754	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10764644	0.86[ASN][1000 genomes]
rs10764645	0.87[ASN][1000 genomes]
rs10764654	0.96[ASN][1000 genomes]
rs10829065	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10829076	0.91[ASN][1000 genomes]
rs10829099	0.96[ASN][1000 genomes]
rs10829103	0.96[ASN][1000 genomes]
rs10829115	0.93[ASN][1000 genomes]
rs11015260	0.80[ASN][1000 genomes]
rs11015261	0.83[ASN][1000 genomes]
rs11015272	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11015279	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11015280	0.85[ASN][1000 genomes]
rs11015284	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11015286	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11015289	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11015291	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11015305	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11015309	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11015320	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11015321	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11015322	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11015349	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12243481	0.87[ASN][1000 genomes]
rs12256219	0.91[ASN][1000 genomes]
rs12356134	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17754347	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3758440	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4463751	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7078094	0.83[ASN][1000 genomes]
rs7094688	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72629732	0.82[AMR][1000 genomes]
rs7914180	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7923125	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9299834	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831812	chr10:27061506-27234267	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv971858	chr10:27066006-27157708	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27095600-27148800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:27111800-27147000	Weak transcription	Fetal Intestine Large	intestine
3	chr10:27119600-27147200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr10:27120600-27142600	Weak transcription	HepG2	liver
5	chr10:27122600-27143400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr10:27123000-27145000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr10:27124400-27146200	Weak transcription	Fetal Muscle Leg	muscle
8	chr10:27128000-27143200	Weak transcription	Osteobl	bone
9	chr10:27129200-27142600	Weak transcription	Right Ventricle	heart
10	chr10:27129400-27146000	Weak transcription	Pancreas	Pancrea
11	chr10:27129400-27146400	Weak transcription	Gastric	stomach
12	chr10:27129400-27146600	Weak transcription	Esophagus	oesophagus
13	chr10:27129400-27147200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr10:27129400-27148200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr10:27129600-27146600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr10:27130000-27143800	Weak transcription	Brain Angular Gyrus	brain
17	chr10:27130200-27143000	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr10:27130200-27143600	Weak transcription	NHDF-Ad	bronchial
19	chr10:27130200-27145600	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr10:27130800-27145000	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr10:27131200-27143200	Weak transcription	Stomach Mucosa	stomach
22	chr10:27131200-27143400	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr10:27131200-27146000	Weak transcription	Right Atrium	heart
24	chr10:27131600-27145000	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr10:27132000-27142800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr10:27133600-27146400	Weak transcription	Psoas Muscle	Psoas
27	chr10:27133600-27148200	Weak transcription	Aorta	Aorta
28	chr10:27134000-27143200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr10:27134000-27143600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr10:27134000-27145000	Weak transcription	Fetal Thymus	thymus
31	chr10:27134000-27145400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr10:27134000-27145400	Weak transcription	Adipose Nuclei	Adipose
33	chr10:27134000-27146800	Weak transcription	Brain Hippocampus Middle	brain
34	chr10:27134200-27145400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr10:27134400-27144200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr10:27134600-27143800	Weak transcription	Thymus	Thymus
37	chr10:27135800-27148200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr10:27137000-27146200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr10:27137000-27146800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr10:27137400-27145400	Weak transcription	Hela-S3	cervix
41	chr10:27138600-27143800	Weak transcription	Colon Smooth Muscle	Colon
42	chr10:27138600-27147000	Enhancers	Primary T helper cells PMA-I stimulated	--
43	chr10:27139000-27143600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr10:27139800-27145400	Weak transcription	Brain Substantia Nigra	brain
45	chr10:27140600-27142800	Weak transcription	GM12878-XiMat	blood
46	chr10:27140600-27143200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr10:27140600-27143200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr10:27140600-27143400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr10:27140600-27143600	Weak transcription	Primary B cells from peripheral blood	blood
50	chr10:27140600-27144200	Weak transcription	Duodenum Mucosa	Duodenum

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