Variant report

Variant	rs11015289
Chromosome Location	chr10:27078628-27078629
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27074245..27076242-chr10:27078041..27079548,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10764644	0.99[ASN][1000 genomes]
rs10764645	1.00[ASN][1000 genomes]
rs10764654	0.91[ASN][1000 genomes]
rs10829065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10829076	0.96[ASN][1000 genomes]
rs10829099	0.91[ASN][1000 genomes]
rs10829103	0.91[ASN][1000 genomes]
rs10829115	0.88[ASN][1000 genomes]
rs11015260	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11015261	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11015272	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11015279	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11015280	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11015284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015286	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015291	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11015305	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11015309	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11015320	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11015321	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11015322	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11015349	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12243481	1.00[ASN][1000 genomes]
rs12256219	0.96[ASN][1000 genomes]
rs12356134	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12357198	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17754347	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3758440	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4463751	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7078094	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7094688	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72629732	0.88[AMR][1000 genomes]
rs7914180	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7923125	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9299834	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv933544	chr10:27005220-27111998	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv831812	chr10:27061506-27234267	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv971858	chr10:27066006-27157708	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27044800-27082000	Weak transcription	Fetal Lung	lung
2	chr10:27051400-27082000	Weak transcription	Fetal Stomach	stomach
3	chr10:27058000-27079200	Weak transcription	Dnd41	blood
4	chr10:27068400-27079400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr10:27069200-27078800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:27069400-27079600	Weak transcription	K562	blood
7	chr10:27069800-27084600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:27070600-27082800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr10:27070800-27091800	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr10:27071000-27080600	Weak transcription	Fetal Intestine Large	intestine
11	chr10:27071000-27080800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr10:27071000-27082000	Weak transcription	Fetal Brain Male	brain
13	chr10:27071000-27083800	Weak transcription	Fetal Intestine Small	intestine
14	chr10:27071000-27084600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr10:27071200-27079400	Weak transcription	HSMM	muscle
16	chr10:27071200-27079400	Weak transcription	Osteobl	bone
17	chr10:27071200-27079800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr10:27071200-27080800	Weak transcription	Brain Angular Gyrus	brain
19	chr10:27071200-27082000	Weak transcription	A549	lung
20	chr10:27071200-27089000	Weak transcription	Lung	lung
21	chr10:27071200-27089600	Weak transcription	Spleen	Spleen
22	chr10:27071400-27079200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr10:27071400-27080800	Weak transcription	Liver	Liver
24	chr10:27071400-27088600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr10:27072000-27081800	Weak transcription	NH-A	brain
26	chr10:27072200-27080200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr10:27073000-27079400	Weak transcription	Small Intestine	intestine
28	chr10:27073000-27081000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr10:27073000-27087000	Weak transcription	Thymus	Thymus
30	chr10:27073000-27088200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr10:27073200-27079600	Weak transcription	Fetal Thymus	thymus
32	chr10:27073400-27080600	Weak transcription	Brain Hippocampus Middle	brain
33	chr10:27073800-27080800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr10:27074000-27079400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr10:27074000-27080200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr10:27074000-27081800	Weak transcription	Brain Cingulate Gyrus	brain
37	chr10:27074000-27081800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr10:27074200-27079400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr10:27074200-27082200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr10:27074600-27081800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr10:27074800-27079400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr10:27074800-27081600	Weak transcription	Duodenum Mucosa	Duodenum
43	chr10:27074800-27083200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr10:27074800-27091600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr10:27074800-27091800	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr10:27075000-27079400	Weak transcription	NHEK	skin
47	chr10:27075000-27080400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr10:27075000-27081000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr10:27075000-27087000	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr10:27075000-27087000	Weak transcription	Monocytes-CD14+_RO01746	blood

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