Variant report

Variant	rs10829099
Chromosome Location	chr10:27130147-27130148
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27125897..27127409-chr10:27129150..27132076,2	MCF-7	breast:
2	chr10:27128201..27132889-chr10:27148380..27152470,5	K562	blood:

Variant related genes	Relation type
ENSG00000136754	Chromatin interaction

Extended variants
information (count: 166 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:162)

rs_ID	r²[population]
rs10082354	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10082408	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10082409	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10082516	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10159978	0.91[YRI][hapmap];0.81[AFR][1000 genomes]
rs10437433	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10741122	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10764644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10764645	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10764646	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10764647	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10764648	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10764649	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10764650	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10764651	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10764652	1.00[CEU][hapmap];0.81[YRI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10764653	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10764654	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10764655	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10764656	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10764657	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10764658	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10829056	0.91[YRI][hapmap]
rs10829059	0.91[YRI][hapmap]
rs10829061	0.91[YRI][hapmap]
rs10829062	0.91[YRI][hapmap]
rs10829065	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10829068	0.91[YRI][hapmap]
rs10829069	0.88[YRI][hapmap]
rs10829073	0.92[YRI][hapmap];0.81[AFR][1000 genomes]
rs10829074	0.92[YRI][hapmap];0.81[AFR][1000 genomes]
rs10829076	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10829077	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10829078	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10829079	0.94[YRI][hapmap];0.81[AFR][1000 genomes]
rs10829080	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10829081	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10829082	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10829084	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10829085	0.80[AFR][1000 genomes]
rs10829086	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10829087	0.85[EUR][1000 genomes]
rs10829089	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10829090	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10829091	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10829092	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10829093	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10829094	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10829095	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10829096	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10829097	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10829098	1.00[CEU][hapmap];0.82[YRI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10829100	1.00[CEU][hapmap];0.82[YRI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10829101	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10829102	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10829103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10829105	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10829106	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10829107	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs10829108	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10829109	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10829110	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10829111	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10829112	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10829113	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10829114	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10829115	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10829116	0.86[EUR][1000 genomes]
rs10829117	0.86[EUR][1000 genomes]
rs10829118	0.86[EUR][1000 genomes]
rs10829119	0.86[EUR][1000 genomes]
rs10829120	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10829121	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10829122	0.80[EUR][1000 genomes]
rs10829124	0.84[EUR][1000 genomes]
rs10829125	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11015260	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11015261	0.87[ASN][1000 genomes]
rs11015262	0.91[YRI][hapmap]
rs11015266	0.87[YRI][hapmap]
rs11015272	0.89[ASN][1000 genomes]
rs11015279	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11015280	0.89[ASN][1000 genomes]
rs11015284	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11015286	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11015289	0.91[ASN][1000 genomes]
rs11015291	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11015305	0.95[ASN][1000 genomes]
rs11015309	0.95[ASN][1000 genomes]
rs11015313	0.81[AFR][1000 genomes]
rs11015320	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11015321	0.95[ASN][1000 genomes]
rs11015322	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11015324	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11015327	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11015328	0.82[AMR][1000 genomes]
rs11015329	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11015330	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11015333	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11015334	1.00[CEU][hapmap];0.80[YRI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11015335	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11015336	1.00[CEU][hapmap];0.81[YRI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11015337	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11015340	0.96[AFR][1000 genomes]
rs11015341	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11015342	0.86[EUR][1000 genomes]
rs11015343	0.97[AFR][1000 genomes]
rs11015344	0.85[EUR][1000 genomes]
rs11015345	0.86[EUR][1000 genomes]
rs11015346	0.86[EUR][1000 genomes]
rs11015347	0.86[EUR][1000 genomes]
rs11015349	0.96[ASN][1000 genomes]
rs12243481	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12247684	0.95[AFR][1000 genomes]
rs12251277	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12256219	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12265625	0.96[YRI][hapmap];0.92[AFR][1000 genomes]
rs12269511	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12356134	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12357198	0.96[ASN][1000 genomes]
rs12358409	0.92[YRI][hapmap]
rs12358643	0.82[EUR][1000 genomes]
rs12359532	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12413375	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12414600	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1408530	0.91[YRI][hapmap]
rs1409129	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16927341	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs17754347	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17754556	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17754586	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17816671	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2225015	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3758440	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4372343	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4463751	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs56822359	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67016888	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7068321	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7073300	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7073329	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7075503	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7076986	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7078094	0.87[ASN][1000 genomes]
rs7078643	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7090495	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7094688	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7096454	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7097837	0.94[CEU][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs718825	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs718826	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs718827	0.87[YRI][hapmap];0.81[AFR][1000 genomes]
rs718828	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7904880	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7914180	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7919153	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7919926	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7923125	0.95[ASN][1000 genomes]
rs9299834	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9664597	0.86[AMR][1000 genomes]
rs9804217	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9804395	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831812	chr10:27061506-27234267	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv971858	chr10:27066006-27157708	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv11591	chr10:27117697-27135748	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27095000-27130600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr10:27095000-27138600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr10:27095600-27132600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr10:27095600-27148800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:27109400-27132600	Weak transcription	HMEC	breast
6	chr10:27110000-27130400	Weak transcription	HUVEC	blood vessel
7	chr10:27111800-27147000	Weak transcription	Fetal Intestine Large	intestine
8	chr10:27112000-27130400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr10:27119600-27130400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr10:27119600-27133600	Weak transcription	Thymus	Thymus
11	chr10:27119600-27147200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr10:27120600-27142600	Weak transcription	HepG2	liver
13	chr10:27121200-27130800	Weak transcription	Dnd41	blood
14	chr10:27122600-27133000	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr10:27122600-27136800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr10:27122600-27143400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr10:27123000-27145000	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr10:27124400-27146200	Weak transcription	Fetal Muscle Leg	muscle
19	chr10:27125000-27130400	Weak transcription	Fetal Stomach	stomach
20	chr10:27125000-27131600	Weak transcription	Fetal Intestine Small	intestine
21	chr10:27125600-27131600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr10:27125800-27131000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr10:27126000-27131600	Enhancers	Primary B cells from peripheral blood	blood
24	chr10:27126000-27131800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr10:27126200-27130600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr10:27126400-27131200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr10:27126400-27133400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr10:27126400-27133400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr10:27126600-27135600	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr10:27126600-27140000	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr10:27126800-27133000	Weak transcription	Ovary	ovary
32	chr10:27127000-27131000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr10:27127200-27131600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
34	chr10:27127200-27132200	Enhancers	Primary T helper cells fromperipheralblood	blood
35	chr10:27127200-27137000	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr10:27127400-27131600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr10:27127600-27131600	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr10:27128000-27131600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
39	chr10:27128000-27139600	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr10:27128000-27143200	Weak transcription	Osteobl	bone
41	chr10:27128200-27131200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr10:27128400-27136800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr10:27128600-27131200	Enhancers	Primary hematopoietic stem cells	blood
44	chr10:27128600-27131400	Enhancers	Primary T cells from cord blood	blood
45	chr10:27128800-27130200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr10:27128800-27130200	Enhancers	Pancreatic Islets	Pancreatic Islet
47	chr10:27128800-27130200	Enhancers	Psoas Muscle	Psoas
48	chr10:27128800-27130200	Enhancers	NHDF-Ad	bronchial
49	chr10:27128800-27131000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
50	chr10:27128800-27131200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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