Variant report

Variant	rs11015305
Chromosome Location	chr10:27104745-27104746
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27098834..27102498-chr10:27103196..27108040,4	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10764644	0.95[ASN][1000 genomes]
rs10764645	0.96[ASN][1000 genomes]
rs10764654	0.95[ASN][1000 genomes]
rs10829065	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10829076	1.00[ASN][1000 genomes]
rs10829099	0.95[ASN][1000 genomes]
rs10829103	0.95[ASN][1000 genomes]
rs10829115	0.92[ASN][1000 genomes]
rs11015260	0.89[ASN][1000 genomes]
rs11015261	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11015272	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11015279	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11015280	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11015284	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11015286	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11015289	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11015291	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11015309	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015320	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015321	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015322	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015349	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12243481	0.96[ASN][1000 genomes]
rs12256219	1.00[ASN][1000 genomes]
rs12356134	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12357198	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17754347	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3758440	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4463751	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7078094	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7094688	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72629732	0.91[AMR][1000 genomes]
rs7914180	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923125	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9299834	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv933544	chr10:27005220-27111998	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv831812	chr10:27061506-27234267	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv971858	chr10:27066006-27157708	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27082200-27105400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr10:27085600-27119000	Weak transcription	Fetal Lung	lung
3	chr10:27086600-27110400	Weak transcription	Fetal Intestine Large	intestine
4	chr10:27091800-27113200	Weak transcription	Placenta	Placenta
5	chr10:27093400-27112400	Weak transcription	Left Ventricle	heart
6	chr10:27094000-27108000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:27094600-27108400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:27094600-27111200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr10:27094800-27108000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:27094800-27111200	Weak transcription	Ovary	ovary
11	chr10:27095000-27130600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr10:27095000-27138600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr10:27095200-27105000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:27095200-27106600	Weak transcription	Osteobl	bone
15	chr10:27095200-27110800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr10:27095200-27119000	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr10:27095400-27110800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr10:27095400-27111200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr10:27095400-27113000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr10:27095400-27116200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr10:27095400-27129800	Weak transcription	NHEK	skin
22	chr10:27095600-27105000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr10:27095600-27105800	Weak transcription	Lung	lung
24	chr10:27095600-27105800	Weak transcription	Thymus	Thymus
25	chr10:27095600-27106000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr10:27095600-27106000	Weak transcription	Aorta	Aorta
27	chr10:27095600-27107800	Weak transcription	Brain Hippocampus Middle	brain
28	chr10:27095600-27109800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr10:27095600-27111000	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr10:27095600-27114600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr10:27095600-27115400	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr10:27095600-27129000	Weak transcription	Right Atrium	heart
33	chr10:27095600-27132600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr10:27095600-27148800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr10:27095800-27113400	Weak transcription	Duodenum Mucosa	Duodenum
36	chr10:27096600-27106200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr10:27096800-27105800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr10:27096800-27106000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr10:27096800-27108200	Weak transcription	Brain Substantia Nigra	brain
40	chr10:27096800-27108200	Weak transcription	Fetal Thymus	thymus
41	chr10:27096800-27110800	Weak transcription	Dnd41	blood
42	chr10:27096800-27112400	Weak transcription	Gastric	stomach
43	chr10:27097000-27104800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr10:27097000-27104800	Weak transcription	GM12878-XiMat	blood
45	chr10:27097200-27120000	Weak transcription	HepG2	liver
46	chr10:27097400-27108800	Weak transcription	Primary T cells from cord blood	blood
47	chr10:27097600-27109800	Weak transcription	Fetal Stomach	stomach
48	chr10:27097800-27110400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr10:27099000-27113800	Weak transcription	Fetal Brain Female	brain
50	chr10:27099200-27107800	Weak transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links