Variant report

Variant	rs10829059
Chromosome Location	chr10:27058855-27058856
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27057270..27060234-chr10:27061073..27062883,2	K562	blood:
2	chr10:27057922..27061577-chr10:27062885..27066099,3	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10159978	0.93[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs10764642	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10764644	0.90[AFR][1000 genomes]
rs10764645	0.83[AFR][1000 genomes]
rs10764652	0.81[CEU][hapmap]
rs10829055	0.87[CEU][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10829056	0.93[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10829057	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10829061	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10829062	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10829068	1.00[CEU][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10829069	1.00[CEU][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10829072	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10829073	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10829074	0.93[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10829077	0.83[YRI][hapmap]
rs10829079	0.92[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10829085	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10829097	0.80[CEU][hapmap]
rs10829099	0.91[YRI][hapmap]
rs10829101	0.80[CEU][hapmap]
rs10829107	0.92[CEU][hapmap];0.90[YRI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11015262	0.86[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11015266	1.00[CEU][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11015267	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs11015276	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11015283	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11015298	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11015300	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11015308	0.93[EUR][1000 genomes]
rs11015313	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11015340	0.91[EUR][1000 genomes]
rs11015343	0.94[EUR][1000 genomes]
rs12243481	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs12247684	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12256219	0.85[AFR][1000 genomes]
rs12265625	0.93[CEU][hapmap];0.87[YRI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12267091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12358409	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1408530	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16927341	0.92[CEU][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28538332	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7082503	0.93[CEU][hapmap]
rs718827	1.00[CEU][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv933544	chr10:27005220-27111998	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26988000-27069600	Weak transcription	Colon Smooth Muscle	Colon
2	chr10:27021600-27069600	Weak transcription	Esophagus	oesophagus
3	chr10:27023400-27070000	Weak transcription	Pancreas	Pancrea
4	chr10:27025600-27069600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:27025800-27068200	Weak transcription	Spleen	Spleen
6	chr10:27025800-27070800	Weak transcription	Aorta	Aorta
7	chr10:27026000-27069600	Weak transcription	Brain Angular Gyrus	brain
8	chr10:27027400-27069400	Weak transcription	Brain Hippocampus Middle	brain
9	chr10:27027800-27069600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr10:27028200-27068600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr10:27028400-27069800	Weak transcription	NHLF	lung
12	chr10:27028600-27062200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr10:27029800-27069600	Weak transcription	HSMMtube	muscle
14	chr10:27032000-27068200	Weak transcription	Small Intestine	intestine
15	chr10:27032000-27069600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr10:27032400-27069400	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr10:27032400-27069600	Weak transcription	Lung	lung
18	chr10:27032600-27069800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr10:27032800-27060600	Weak transcription	Brain Substantia Nigra	brain
20	chr10:27033200-27064000	Weak transcription	HepG2	liver
21	chr10:27033600-27069200	Weak transcription	Psoas Muscle	Psoas
22	chr10:27034000-27061800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr10:27034000-27069000	Weak transcription	Colonic Mucosa	Colon
24	chr10:27034000-27069600	Weak transcription	Ovary	ovary
25	chr10:27034000-27069800	Weak transcription	Stomach Smooth Muscle	stomach
26	chr10:27034400-27069600	Weak transcription	Right Ventricle	heart
27	chr10:27035600-27060400	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr10:27036800-27068400	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr10:27037400-27062200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr10:27040000-27059200	Weak transcription	Brain Germinal Matrix	brain
31	chr10:27040800-27060800	Weak transcription	Fetal Muscle Leg	muscle
32	chr10:27044800-27062600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr10:27044800-27064800	Weak transcription	HMEC	breast
34	chr10:27044800-27068000	Weak transcription	K562	blood
35	chr10:27044800-27068400	Weak transcription	A549	lung
36	chr10:27044800-27069000	Weak transcription	Brain Cingulate Gyrus	brain
37	chr10:27044800-27069600	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr10:27044800-27070400	Weak transcription	HUVEC	blood vessel
39	chr10:27044800-27082000	Weak transcription	Fetal Lung	lung
40	chr10:27046000-27065400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr10:27047200-27060200	Strong transcription	Monocytes-CD14+_RO01746	blood
42	chr10:27048200-27062000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr10:27048200-27069400	Weak transcription	NHDF-Ad	bronchial
44	chr10:27048400-27059000	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr10:27050600-27060000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr10:27050800-27060400	Strong transcription	Primary B cells from cord blood	blood
47	chr10:27051000-27059800	Strong transcription	Primary T helper cells PMA-I stimulated	--
48	chr10:27051200-27059200	Strong transcription	Rectal Mucosa Donor 31	rectum
49	chr10:27051200-27059400	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr10:27051200-27060200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

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