Variant report

Variant	rs10829055
Chromosome Location	chr10:27033639-27033640
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27032167..27034372-chr10:27147894..27149517,2	K562	blood:
2	chr10:27031601..27034238-chr10:27168698..27170803,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10159978	0.86[YRI][hapmap]
rs10764642	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10829056	0.93[CEU][hapmap];0.87[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10829057	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10829059	0.87[CEU][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10829061	0.86[CEU][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10829062	0.86[CEU][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10829068	0.87[CEU][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10829069	0.86[CEU][hapmap];0.83[YRI][hapmap];0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10829072	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs10829073	0.87[CEU][hapmap];0.87[YRI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10829074	0.81[CEU][hapmap];0.87[YRI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10829079	0.83[YRI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10829085	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10829107	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11015262	1.00[CEU][hapmap];0.86[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11015266	0.86[CEU][hapmap];0.86[YRI][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11015267	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11015276	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11015283	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11015298	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs11015300	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11015308	0.87[EUR][1000 genomes]
rs11015313	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11015340	0.86[EUR][1000 genomes]
rs11015343	0.88[EUR][1000 genomes]
rs12243481	0.85[YRI][hapmap]
rs12247684	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12265625	0.81[CEU][hapmap];0.84[YRI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12267091	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12358409	0.87[CEU][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1408530	0.87[CEU][hapmap];0.87[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16927341	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28538332	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7082503	0.81[CEU][hapmap]
rs718827	0.87[CEU][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv933544	chr10:27005220-27111998	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26988000-27069600	Weak transcription	Colon Smooth Muscle	Colon
2	chr10:26994400-27040800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr10:26997600-27054400	Weak transcription	Fetal Brain Male	brain
4	chr10:26999800-27037400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr10:27001200-27041200	Strong transcription	Fetal Thymus	thymus
6	chr10:27001800-27041200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr10:27007800-27041200	Strong transcription	Dnd41	blood
8	chr10:27010000-27034600	Strong transcription	Thymus	Thymus
9	chr10:27011200-27047400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr10:27012000-27044400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr10:27015200-27035400	Weak transcription	Stomach Mucosa	stomach
12	chr10:27018000-27036400	Strong transcription	K562	blood
13	chr10:27018000-27038800	Strong transcription	Rectal Mucosa Donor 29	rectum
14	chr10:27019800-27036000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:27020400-27035400	Strong transcription	Primary T cells from cord blood	blood
16	chr10:27021600-27069600	Weak transcription	Esophagus	oesophagus
17	chr10:27023400-27040600	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr10:27023400-27057800	Weak transcription	Gastric	stomach
19	chr10:27023400-27070000	Weak transcription	Pancreas	Pancrea
20	chr10:27023800-27040600	Strong transcription	Duodenum Mucosa	Duodenum
21	chr10:27024000-27041000	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr10:27024000-27047600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr10:27024000-27048000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:27024200-27036600	Strong transcription	A549	lung
25	chr10:27024200-27048600	Weak transcription	Fetal Heart	heart
26	chr10:27024400-27041000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:27024600-27041000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr10:27024800-27040800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr10:27024800-27048000	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr10:27025000-27054200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr10:27025200-27035200	Weak transcription	Fetal Kidney	kidney
32	chr10:27025600-27069600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr10:27025800-27039200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr10:27025800-27044400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr10:27025800-27068200	Weak transcription	Spleen	Spleen
36	chr10:27025800-27070800	Weak transcription	Aorta	Aorta
37	chr10:27026000-27036000	Weak transcription	Primary hematopoietic stem cells	blood
38	chr10:27026000-27069600	Weak transcription	Brain Angular Gyrus	brain
39	chr10:27026600-27033800	Strong transcription	Rectal Mucosa Donor 31	rectum
40	chr10:27027000-27034800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr10:27027000-27035000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr10:27027200-27037000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr10:27027200-27037400	Strong transcription	HMEC	breast
44	chr10:27027200-27043600	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr10:27027400-27044000	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr10:27027400-27069400	Weak transcription	Brain Hippocampus Middle	brain
47	chr10:27027600-27035600	Strong transcription	Fetal Intestine Large	intestine
48	chr10:27027800-27069600	Weak transcription	Rectal Smooth Muscle	rectum
49	chr10:27028000-27036800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr10:27028200-27036600	Strong transcription	Duodenum Smooth Muscle	Duodenum

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