Variant report

Variant	rs1411283
Chromosome Location	chr10:27302772-27302773
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 103 )
Associated
traits (count: 11 )

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10458707	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10734064	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10741126	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10764663	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10764664	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10764665	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10764667	0.85[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.89[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10764668	0.86[ASN][1000 genomes]
rs10764669	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10764686	1.00[CHB][hapmap];0.86[CHD][hapmap]
rs10829153	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10829154	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10829159	0.85[ASN][1000 genomes]
rs10829160	0.85[ASN][1000 genomes]
rs10829161	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10829162	0.95[CHB][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes]
rs10829163	0.95[CHB][hapmap];1.00[CHD][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs10829164	0.89[ASN][1000 genomes]
rs10829166	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10829167	0.95[CHB][hapmap];1.00[CHD][hapmap];0.80[JPT][hapmap];0.89[ASN][1000 genomes]
rs10829172	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.83[ASN][1000 genomes]
rs10829173	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10829174	1.00[CHB][hapmap];0.93[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.83[ASN][1000 genomes]
rs10829176	0.84[ASN][1000 genomes]
rs10829180	0.85[ASN][1000 genomes]
rs10829181	0.85[ASN][1000 genomes]
rs10829191	0.90[CHB][hapmap]
rs10829201	1.00[CHB][hapmap]
rs11015446	0.92[ASN][1000 genomes]
rs11015455	0.91[ASN][1000 genomes]
rs11015456	0.91[ASN][1000 genomes]
rs11015457	0.91[ASN][1000 genomes]
rs11015461	0.89[ASN][1000 genomes]
rs11015522	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11015556	0.91[CHB][hapmap]
rs11015559	0.91[CHB][hapmap]
rs11015564	0.91[CHB][hapmap]
rs11015565	0.91[CHB][hapmap]
rs11015570	1.00[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap]
rs11015571	0.91[CHB][hapmap]
rs11015588	1.00[CHB][hapmap]
rs11015600	1.00[CHB][hapmap];0.86[CHD][hapmap]
rs11592897	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12355862	0.92[ASN][1000 genomes]
rs12572344	0.95[CHB][hapmap]
rs1963735	0.94[ASN][1000 genomes]
rs1981296	0.95[CHB][hapmap];0.88[CHD][hapmap];0.80[GIH][hapmap];0.94[JPT][hapmap]
rs2026120	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2183334	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2274634	0.91[CHB][hapmap];0.88[CHD][hapmap]
rs2274635	0.91[CHB][hapmap];0.88[CHD][hapmap]
rs2274741	0.95[CHB][hapmap];0.81[JPT][hapmap];0.92[ASN][1000 genomes]
rs2297145	0.91[CHB][hapmap];0.93[CHD][hapmap];0.81[JPT][hapmap]
rs2297147	0.85[ASN][1000 genomes]
rs2368217	0.91[CHB][hapmap]
rs34844053	0.89[ASN][1000 genomes]
rs35995872	0.89[ASN][1000 genomes]
rs3737055	1.00[CHB][hapmap];0.98[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.85[ASN][1000 genomes]
rs3780920	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs3780921	0.91[CHB][hapmap]
rs3780922	0.91[CHB][hapmap];0.88[CHD][hapmap]
rs3780926	1.00[CHB][hapmap];0.88[CHD][hapmap];0.80[GIH][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap]
rs3824593	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs3824691	0.89[ASN][1000 genomes]
rs3904244	0.95[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs3932559	0.91[CHB][hapmap]
rs4018760	0.81[ASN][1000 genomes]
rs4481929	0.83[ASN][1000 genomes]
rs4747581	0.89[ASN][1000 genomes]
rs4747588	0.85[CHB][hapmap]
rs4749213	0.95[CHB][hapmap];0.81[JPT][hapmap];0.92[ASN][1000 genomes]
rs4749214	0.92[ASN][1000 genomes]
rs4749216	0.91[ASN][1000 genomes]
rs6482585	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482596	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs6482600	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs6482601	1.00[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap]
rs7067696	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7068375	1.00[CHB][hapmap];0.88[CHD][hapmap];0.80[GIH][hapmap];0.94[JPT][hapmap]
rs7079792	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7083768	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs7086311	0.91[CHB][hapmap];0.93[CHD][hapmap];0.81[JPT][hapmap]
rs7086553	1.00[CHB][hapmap];0.86[CHD][hapmap]
rs7087082	0.92[ASW][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.87[MEX][hapmap];0.98[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7087089	0.91[ASN][1000 genomes]
rs7088171	0.95[CHB][hapmap];0.91[ASN][1000 genomes]
rs7091128	1.00[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap]
rs7091723	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs7091830	0.84[JPT][hapmap]
rs7097009	0.85[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.92[MEX][hapmap];0.93[MKK][hapmap];0.93[TSI][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7900024	1.00[CHB][hapmap];0.88[CHD][hapmap];0.80[GIH][hapmap];0.94[JPT][hapmap]
rs7901653	1.00[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap]
rs7901840	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7902690	0.80[ASN][1000 genomes]
rs7909684	0.85[ASN][1000 genomes]
rs7910430	1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs7910688	0.91[CHB][hapmap];0.88[CHD][hapmap]
rs7911508	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7914630	0.90[CHB][hapmap]
rs7919621	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs882474	1.00[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap]
rs9299837	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9651378	0.91[CHB][hapmap];0.81[JPT][hapmap]

mRNA abundance (count:11)

SNP	Gene	Cis/trans	Tissue	Source
rs1411283	MASTL	cis	lymphoblastoid	seeQTL
rs1411283	ACBD5	cis	cerebellum	SCAN
rs1411283	MASTL	cis	Esophagus Muscularis	GTEx
rs1411283	MASTL	cis	Muscle Skeletal	GTEx
rs1411283	ANKRD26	cis	cerebellum	SCAN
rs1411283	ANKRD26	cis	parietal	SCAN
rs1411283	MASTL	cis	cerebellum	SCAN
rs1411283	MASTL	cis	brain	seeQTL
rs1411283	MASTL	cis	Thyroid	GTEx
rs1411283	MASTL	cis	Skin Sun Exposed Lower leg	GTEx
rs1411283	MASTL	cis	multi-tissue	Pritchard

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27257600-27319000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:27278600-27309200	Weak transcription	HSMM	muscle
3	chr10:27283200-27388400	Weak transcription	Psoas Muscle	Psoas
4	chr10:27284400-27310400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr10:27284800-27308800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr10:27285000-27319200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:27285400-27312000	Weak transcription	Brain Hippocampus Middle	brain
8	chr10:27285400-27319200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr10:27286400-27310000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr10:27286400-27316600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr10:27286600-27311800	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr10:27286600-27312000	Weak transcription	Fetal Thymus	thymus
13	chr10:27287000-27308800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr10:27287000-27312000	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr10:27287000-27350600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr10:27287800-27310000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr10:27287800-27350600	Weak transcription	Aorta	Aorta
18	chr10:27288400-27329400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr10:27288600-27312000	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr10:27288600-27312000	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr10:27288800-27357000	Weak transcription	Gastric	stomach
22	chr10:27289200-27361200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr10:27289600-27309800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr10:27289600-27310000	Weak transcription	HSMMtube	muscle
25	chr10:27289600-27312400	Weak transcription	Brain Substantia Nigra	brain
26	chr10:27289600-27314200	Weak transcription	Spleen	Spleen
27	chr10:27289600-27318800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr10:27289600-27360800	Weak transcription	Hela-S3	cervix
29	chr10:27289800-27360800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr10:27290200-27351400	Weak transcription	Thymus	Thymus
31	chr10:27290200-27361400	Weak transcription	Placenta	Placenta
32	chr10:27290400-27309600	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr10:27290600-27310000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr10:27290600-27314800	Weak transcription	Fetal Kidney	kidney
35	chr10:27290800-27326800	Weak transcription	Osteobl	bone
36	chr10:27291000-27310200	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr10:27291000-27312200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr10:27291200-27316600	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr10:27291200-27324000	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr10:27291400-27304200	Weak transcription	Fetal Muscle Leg	muscle
41	chr10:27291400-27324000	Weak transcription	Brain Germinal Matrix	brain
42	chr10:27291400-27324200	Weak transcription	Primary hematopoietic stem cells	blood
43	chr10:27291400-27360600	Weak transcription	Lung	lung
44	chr10:27291600-27304400	Weak transcription	Fetal Muscle Trunk	muscle
45	chr10:27291600-27308800	Weak transcription	Fetal Stomach	stomach
46	chr10:27291600-27312600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr10:27291600-27314600	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr10:27291600-27316400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr10:27291600-27321200	Weak transcription	Fetal Intestine Small	intestine
50	chr10:27291600-27325200	Weak transcription	Brain Inferior Temporal Lobe	brain

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