Variant report

Variant	rs10829160
Chromosome Location	chr10:27308037-27308038
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10458707	0.83[ASN][1000 genomes]
rs10741126	0.85[ASN][1000 genomes]
rs10764663	0.83[ASN][1000 genomes]
rs10829159	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10829161	0.84[ASN][1000 genomes]
rs10829162	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10829163	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10829164	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10829166	0.83[ASN][1000 genomes]
rs10829167	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11015446	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11015455	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11015456	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11015457	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11015461	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11592897	0.85[ASN][1000 genomes]
rs12355862	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1411283	0.85[ASN][1000 genomes]
rs1963735	0.80[ASN][1000 genomes]
rs2183334	0.84[ASN][1000 genomes]
rs2274741	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34844053	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35995872	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3824691	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3904244	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4747581	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4749213	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4749214	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4749216	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6482585	0.85[ASN][1000 genomes]
rs7087082	0.83[ASN][1000 genomes]
rs7087089	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7088171	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7097009	0.83[ASN][1000 genomes]
rs7901840	0.84[ASN][1000 genomes]
rs7902690	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7919621	0.85[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10829160	MASTL	cis	Thyroid	GTEx
rs10829160	YME1L1	Cis_1M	lymphoblastoid	RTeQTL
rs10829160	MASTL	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27257600-27319000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:27278600-27309200	Weak transcription	HSMM	muscle
3	chr10:27283200-27388400	Weak transcription	Psoas Muscle	Psoas
4	chr10:27284400-27310400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr10:27284800-27308800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr10:27285000-27319200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:27285400-27312000	Weak transcription	Brain Hippocampus Middle	brain
8	chr10:27285400-27319200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr10:27286400-27310000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr10:27286400-27316600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr10:27286600-27311800	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr10:27286600-27312000	Weak transcription	Fetal Thymus	thymus
13	chr10:27287000-27308800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr10:27287000-27312000	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr10:27287000-27350600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr10:27287800-27310000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr10:27287800-27350600	Weak transcription	Aorta	Aorta
18	chr10:27288400-27329400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr10:27288600-27312000	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr10:27288600-27312000	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr10:27288800-27357000	Weak transcription	Gastric	stomach
22	chr10:27289200-27361200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr10:27289600-27309800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr10:27289600-27310000	Weak transcription	HSMMtube	muscle
25	chr10:27289600-27312400	Weak transcription	Brain Substantia Nigra	brain
26	chr10:27289600-27314200	Weak transcription	Spleen	Spleen
27	chr10:27289600-27318800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr10:27289600-27360800	Weak transcription	Hela-S3	cervix
29	chr10:27289800-27360800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr10:27290200-27351400	Weak transcription	Thymus	Thymus
31	chr10:27290200-27361400	Weak transcription	Placenta	Placenta
32	chr10:27290400-27309600	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr10:27290600-27310000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr10:27290600-27314800	Weak transcription	Fetal Kidney	kidney
35	chr10:27290800-27326800	Weak transcription	Osteobl	bone
36	chr10:27291000-27310200	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr10:27291000-27312200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr10:27291200-27316600	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr10:27291200-27324000	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr10:27291400-27324000	Weak transcription	Brain Germinal Matrix	brain
41	chr10:27291400-27324200	Weak transcription	Primary hematopoietic stem cells	blood
42	chr10:27291400-27360600	Weak transcription	Lung	lung
43	chr10:27291600-27308800	Weak transcription	Fetal Stomach	stomach
44	chr10:27291600-27312600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr10:27291600-27314600	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr10:27291600-27316400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr10:27291600-27321200	Weak transcription	Fetal Intestine Small	intestine
48	chr10:27291600-27325200	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr10:27291600-27331200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr10:27291600-27351000	Weak transcription	NHLF	lung

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