Variant report

Variant	rs3904244
Chromosome Location	chr10:27361527-27361528
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 140 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:139)

rs_ID	r²[population]
rs10458707	0.95[CHB][hapmap];0.83[JPT][hapmap]
rs10734064	0.92[ASN][1000 genomes]
rs10741126	0.80[ASN][1000 genomes]
rs10764663	0.83[ASN][1000 genomes]
rs10764664	0.96[CHB][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs10764665	0.96[CHB][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs10764667	0.95[CHB][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs10764668	0.92[ASN][1000 genomes]
rs10764669	0.95[CHB][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs10764673	0.85[ASN][1000 genomes]
rs10764675	0.86[ASN][1000 genomes]
rs10764686	0.95[CHB][hapmap]
rs10829159	0.97[EUR][1000 genomes]
rs10829160	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10829161	0.81[ASN][1000 genomes]
rs10829162	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10829163	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10829164	1.00[CEU][hapmap];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10829166	0.83[ASN][1000 genomes]
rs10829167	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10829172	0.91[CHB][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs10829173	0.95[CHB][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs10829174	0.95[CHB][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs10829176	0.89[ASN][1000 genomes]
rs10829180	0.90[ASN][1000 genomes]
rs10829181	0.90[ASN][1000 genomes]
rs10829185	0.83[ASN][1000 genomes]
rs10829191	0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs10829192	0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs10829193	0.86[ASN][1000 genomes]
rs10829201	1.00[CHB][hapmap]
rs11015446	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11015455	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11015456	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11015457	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11015461	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11015522	0.96[CHB][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs11015529	0.97[ASN][1000 genomes]
rs11015530	0.94[ASN][1000 genomes]
rs11015532	0.92[ASN][1000 genomes]
rs11015538	0.86[ASN][1000 genomes]
rs11015542	0.86[ASN][1000 genomes]
rs11015548	0.86[ASN][1000 genomes]
rs11015554	0.86[ASN][1000 genomes]
rs11015555	0.86[ASN][1000 genomes]
rs11015556	0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs11015558	0.82[CHB][hapmap];0.86[ASN][1000 genomes]
rs11015559	0.96[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs11015560	0.86[ASN][1000 genomes]
rs11015564	0.96[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs11015565	0.96[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs11015566	0.86[ASN][1000 genomes]
rs11015570	0.95[CHB][hapmap]
rs11015571	0.96[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs11015588	0.96[CHB][hapmap]
rs11015598	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11015600	0.95[CHB][hapmap]
rs11592897	0.80[ASN][1000 genomes]
rs11813670	0.86[ASN][1000 genomes]
rs12355862	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12571792	0.86[ASN][1000 genomes]
rs12572344	0.81[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs12766193	0.94[ASN][1000 genomes]
rs12768114	0.93[ASN][1000 genomes]
rs12769335	0.86[ASN][1000 genomes]
rs12784464	0.89[ASN][1000 genomes]
rs1411283	0.95[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs1963735	0.80[ASN][1000 genomes]
rs1981296	0.90[CHB][hapmap]
rs2183334	0.96[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs2274634	0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs2274635	0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs2274741	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2274743	0.86[ASN][1000 genomes]
rs2297143	0.85[ASN][1000 genomes]
rs2297145	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2297147	0.90[ASN][1000 genomes]
rs2297151	0.86[ASN][1000 genomes]
rs2297152	0.85[ASN][1000 genomes]
rs2368217	0.96[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs34844053	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35995872	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3737054	0.86[CEU][hapmap]
rs3737055	0.95[CHB][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs3780920	0.96[CHB][hapmap]
rs3780921	0.81[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs3780922	0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs3780926	0.95[CHB][hapmap]
rs3781100	0.97[ASN][1000 genomes]
rs3824593	0.95[CHB][hapmap];0.84[JPT][hapmap]
rs3824691	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3932559	0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs4018760	0.86[ASN][1000 genomes]
rs4481929	0.88[ASN][1000 genomes]
rs4747581	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4747585	0.90[ASN][1000 genomes]
rs4747588	0.81[CHB][hapmap]
rs4749213	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4749214	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4749216	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4749225	0.94[ASN][1000 genomes]
rs4749226	0.86[ASN][1000 genomes]
rs55741077	0.90[ASN][1000 genomes]
rs6482585	0.80[ASN][1000 genomes]
rs6482596	0.96[CHB][hapmap]
rs6482600	0.96[CHB][hapmap]
rs6482601	0.95[CHB][hapmap]
rs67425403	0.86[ASN][1000 genomes]
rs7067696	0.96[CHB][hapmap]
rs7068375	0.95[CHB][hapmap]
rs7073381	0.96[ASN][1000 genomes]
rs7079792	0.96[CHB][hapmap]
rs7083768	0.81[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7086311	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7086553	0.95[CHB][hapmap]
rs7086820	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7087082	0.91[CHB][hapmap];0.83[ASN][1000 genomes]
rs7087089	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7088171	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7091128	0.95[CHB][hapmap]
rs7091723	0.95[CHB][hapmap]
rs7097009	0.95[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs7477806	0.82[ASN][1000 genomes]
rs7896012	0.86[ASN][1000 genomes]
rs7900024	0.95[CHB][hapmap]
rs7901653	0.95[CHB][hapmap]
rs7901840	0.81[ASN][1000 genomes]
rs7902690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7909684	0.89[ASN][1000 genomes]
rs7910430	0.96[CHB][hapmap];0.90[ASN][1000 genomes]
rs7910688	0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs7914630	0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs7919621	0.95[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs7921980	0.86[ASN][1000 genomes]
rs882474	0.95[CHB][hapmap]
rs9299837	0.96[CHB][hapmap]
rs9651378	0.87[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9971193	0.86[ASN][1000 genomes]
rs9971335	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894979	chr10:27325119-27375411	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3904244	YME1L1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27283200-27388400	Weak transcription	Psoas Muscle	Psoas
2	chr10:27291600-27388000	Weak transcription	Small Intestine	intestine
3	chr10:27292000-27362200	Weak transcription	Fetal Brain Male	brain
4	chr10:27313200-27363400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr10:27313200-27388200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr10:27313200-27388600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr10:27313400-27388400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr10:27314600-27388800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:27323400-27388600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr10:27323600-27361800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr10:27326600-27366000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr10:27326800-27388200	Weak transcription	Brain Substantia Nigra	brain
13	chr10:27328000-27388200	Weak transcription	K562	blood
14	chr10:27330200-27381400	Weak transcription	HSMMtube	muscle
15	chr10:27333000-27384600	Weak transcription	Fetal Heart	heart
16	chr10:27341000-27363400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr10:27341200-27365600	Weak transcription	HUVEC	blood vessel
18	chr10:27341400-27376600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr10:27342000-27367600	Weak transcription	Stomach Mucosa	stomach
20	chr10:27348600-27365600	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr10:27350000-27362400	Weak transcription	NH-A	brain
22	chr10:27350200-27364000	Weak transcription	NHDF-Ad	bronchial
23	chr10:27350200-27387800	Weak transcription	HMEC	breast
24	chr10:27351600-27366200	Weak transcription	HSMM	muscle
25	chr10:27351600-27366400	Weak transcription	NHLF	lung
26	chr10:27352800-27362400	Weak transcription	Brain Angular Gyrus	brain
27	chr10:27353000-27365800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr10:27353400-27362000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr10:27355800-27363000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr10:27356400-27362800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr10:27356400-27363800	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr10:27356400-27366600	Strong transcription	Fetal Muscle Leg	muscle
33	chr10:27356400-27367000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr10:27357400-27364200	Strong transcription	Fetal Muscle Trunk	muscle
35	chr10:27357600-27362200	Weak transcription	Fetal Kidney	kidney
36	chr10:27357800-27363600	Strong transcription	Fetal Intestine Small	intestine
37	chr10:27358400-27363400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr10:27358400-27366000	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr10:27358600-27388400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr10:27360000-27361600	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr10:27360200-27362800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr10:27360400-27362200	Strong transcription	Colonic Mucosa	Colon
43	chr10:27360400-27362600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr10:27360400-27362600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr10:27360400-27362600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr10:27360400-27362600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr10:27360400-27362600	Strong transcription	Ovary	ovary
48	chr10:27360400-27362600	Strong transcription	Stomach Smooth Muscle	stomach
49	chr10:27360400-27363000	Strong transcription	Primary T helper cells PMA-I stimulated	--
50	chr10:27360400-27363000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

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