Variant report

Variant	rs7086820
Chromosome Location	chr10:27364740-27364741
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 121 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs10734064	0.92[ASN][1000 genomes]
rs10764663	0.81[ASN][1000 genomes]
rs10764664	0.88[ASN][1000 genomes]
rs10764665	0.88[ASN][1000 genomes]
rs10764667	0.90[ASN][1000 genomes]
rs10764668	0.92[ASN][1000 genomes]
rs10764669	0.89[ASN][1000 genomes]
rs10764673	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10764675	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10829161	0.80[ASN][1000 genomes]
rs10829162	0.87[ASN][1000 genomes]
rs10829163	0.89[ASN][1000 genomes]
rs10829164	0.89[ASN][1000 genomes]
rs10829166	0.81[ASN][1000 genomes]
rs10829167	0.89[ASN][1000 genomes]
rs10829172	0.88[ASN][1000 genomes]
rs10829173	0.88[ASN][1000 genomes]
rs10829174	0.88[ASN][1000 genomes]
rs10829176	0.90[ASN][1000 genomes]
rs10829180	0.90[ASN][1000 genomes]
rs10829181	0.90[ASN][1000 genomes]
rs10829183	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10829185	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10829191	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10829192	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10829193	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10829194	0.84[AMR][1000 genomes]
rs11015446	0.86[ASN][1000 genomes]
rs11015455	0.87[ASN][1000 genomes]
rs11015456	0.87[ASN][1000 genomes]
rs11015457	0.87[ASN][1000 genomes]
rs11015461	0.89[ASN][1000 genomes]
rs11015522	0.90[ASN][1000 genomes]
rs11015529	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11015530	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11015532	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11015536	0.84[AMR][1000 genomes]
rs11015538	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11015542	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11015548	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11015553	0.84[AMR][1000 genomes]
rs11015554	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11015555	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11015556	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11015558	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11015559	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11015560	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11015564	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11015565	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11015566	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11015571	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11813670	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12255977	0.84[AMR][1000 genomes]
rs12259472	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12355862	0.86[ASN][1000 genomes]
rs12571792	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12572344	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12766193	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12768114	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12769335	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12784464	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2183334	0.80[ASN][1000 genomes]
rs2274634	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2274635	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2274741	0.86[ASN][1000 genomes]
rs2274743	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2275752	0.84[AMR][1000 genomes]
rs2297143	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2297145	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2297147	0.90[ASN][1000 genomes]
rs2297151	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2297152	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2368217	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34844053	0.89[ASN][1000 genomes]
rs35995872	0.89[ASN][1000 genomes]
rs3737054	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3737055	0.90[ASN][1000 genomes]
rs3780921	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3780922	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3781100	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3824691	0.89[ASN][1000 genomes]
rs3904244	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3932559	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4018760	0.86[ASN][1000 genomes]
rs4481929	0.88[ASN][1000 genomes]
rs4747581	0.89[ASN][1000 genomes]
rs4747585	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4749213	0.86[ASN][1000 genomes]
rs4749214	0.86[ASN][1000 genomes]
rs4749216	0.87[ASN][1000 genomes]
rs4749225	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4749226	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55741077	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55955460	0.84[AMR][1000 genomes]
rs67177346	0.86[AMR][1000 genomes]
rs67425403	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7073381	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7075448	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7083768	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7086311	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7087082	0.81[ASN][1000 genomes]
rs7087089	0.87[ASN][1000 genomes]
rs7088171	0.87[ASN][1000 genomes]
rs7097009	0.81[ASN][1000 genomes]
rs7477806	0.82[ASN][1000 genomes]
rs7896012	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7901840	0.80[ASN][1000 genomes]
rs7902690	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7907492	0.83[AMR][1000 genomes]
rs7909444	0.84[AMR][1000 genomes]
rs7909684	0.89[ASN][1000 genomes]
rs7910396	0.84[AMR][1000 genomes]
rs7910430	0.90[ASN][1000 genomes]
rs7910688	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7914630	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7921222	0.84[AMR][1000 genomes]
rs7921980	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9651378	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9971193	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9971335	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894979	chr10:27325119-27375411	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7086820	YME1L1	Cis_1M	lymphoblastoid	RTeQTL
rs7086820	MASTL	cis	Skin Sun Exposed Lower leg	GTEx
rs7086820	LINC00202-1	cis	Nerve Tibial	GTEx
rs7086820	MASTL	cis	Thyroid	GTEx

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27283200-27388400	Weak transcription	Psoas Muscle	Psoas
2	chr10:27291600-27388000	Weak transcription	Small Intestine	intestine
3	chr10:27313200-27388200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr10:27313200-27388600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr10:27313400-27388400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr10:27314600-27388800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:27323400-27388600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr10:27326600-27366000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr10:27326800-27388200	Weak transcription	Brain Substantia Nigra	brain
10	chr10:27328000-27388200	Weak transcription	K562	blood
11	chr10:27330200-27381400	Weak transcription	HSMMtube	muscle
12	chr10:27333000-27384600	Weak transcription	Fetal Heart	heart
13	chr10:27341200-27365600	Weak transcription	HUVEC	blood vessel
14	chr10:27341400-27376600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr10:27342000-27367600	Weak transcription	Stomach Mucosa	stomach
16	chr10:27348600-27365600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr10:27350200-27387800	Weak transcription	HMEC	breast
18	chr10:27351600-27366200	Weak transcription	HSMM	muscle
19	chr10:27351600-27366400	Weak transcription	NHLF	lung
20	chr10:27353000-27365800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr10:27356400-27366600	Strong transcription	Fetal Muscle Leg	muscle
22	chr10:27356400-27367000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr10:27358400-27366000	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr10:27358600-27388400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr10:27360400-27364800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr10:27360400-27364800	Strong transcription	Cortex derived primary cultured neurospheres	brain
27	chr10:27360400-27364800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr10:27360400-27366400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr10:27360400-27367400	Strong transcription	Primary B cells from peripheral blood	blood
30	chr10:27360400-27367400	Strong transcription	Fetal Thymus	thymus
31	chr10:27360400-27368600	Strong transcription	Liver	Liver
32	chr10:27360400-27378800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr10:27360400-27383800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr10:27360400-27384800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr10:27360600-27366200	Strong transcription	Primary T cells from cord blood	blood
36	chr10:27360600-27366600	Strong transcription	Duodenum Smooth Muscle	Duodenum
37	chr10:27360600-27366800	Strong transcription	Duodenum Mucosa	Duodenum
38	chr10:27360600-27367400	Strong transcription	Primary B cells from cord blood	blood
39	chr10:27360600-27367800	Strong transcription	Rectal Mucosa Donor 31	rectum
40	chr10:27360600-27370400	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr10:27360600-27371600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr10:27360600-27372000	Strong transcription	Adipose Nuclei	Adipose
43	chr10:27360600-27384600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr10:27360800-27364800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr10:27360800-27365000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr10:27360800-27366000	Weak transcription	NHEK	skin
47	chr10:27361000-27370000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr10:27361200-27368400	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr10:27361200-27369000	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr10:27361400-27366400	Strong transcription	GM12878-XiMat	blood

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