Variant report

Variant	rs2274741
Chromosome Location	chr10:27303605-27303606
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 104 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10458707	0.95[CHB][hapmap];0.83[JPT][hapmap];0.90[ASN][1000 genomes]
rs10741126	0.92[ASN][1000 genomes]
rs10764663	0.89[ASN][1000 genomes]
rs10764664	0.96[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs10764665	0.96[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs10764667	0.95[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs10764669	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs10764686	0.95[CHB][hapmap]
rs10829159	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10829160	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10829161	0.91[ASN][1000 genomes]
rs10829162	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10829163	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10829164	1.00[CEU][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10829166	0.89[ASN][1000 genomes]
rs10829167	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10829170	0.84[AFR][1000 genomes]
rs10829172	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs10829173	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs10829174	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs10829191	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10829192	0.90[JPT][hapmap]
rs10829201	1.00[CHB][hapmap]
rs11015446	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015455	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11015456	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11015457	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11015461	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11015482	0.84[AFR][1000 genomes]
rs11015522	0.96[CHB][hapmap];0.81[JPT][hapmap]
rs11015529	0.85[ASN][1000 genomes]
rs11015530	0.82[ASN][1000 genomes]
rs11015556	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs11015558	0.82[CHB][hapmap]
rs11015559	0.96[CHB][hapmap];0.95[JPT][hapmap]
rs11015564	0.96[CHB][hapmap];0.95[JPT][hapmap]
rs11015565	0.96[CHB][hapmap];0.95[JPT][hapmap]
rs11015570	0.95[CHB][hapmap]
rs11015571	0.96[CHB][hapmap];0.95[JPT][hapmap]
rs11015588	0.96[CHB][hapmap]
rs11015598	1.00[CEU][hapmap]
rs11015600	0.95[CHB][hapmap]
rs11592897	0.92[ASN][1000 genomes]
rs12355862	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12572344	0.83[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs12766193	0.82[ASN][1000 genomes]
rs12768114	0.81[ASN][1000 genomes]
rs1411283	0.95[CHB][hapmap];0.81[JPT][hapmap];0.92[ASN][1000 genomes]
rs1963735	0.87[ASN][1000 genomes]
rs1981296	0.90[CHB][hapmap]
rs2026120	0.86[ASN][1000 genomes]
rs2183334	0.96[CHB][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes]
rs2274634	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs2274635	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs2297145	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2368217	0.96[CHB][hapmap];0.94[JPT][hapmap]
rs34844053	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35995872	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3737054	0.87[CEU][hapmap]
rs3737055	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs3780920	0.96[CHB][hapmap]
rs3780921	0.83[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap]
rs3780922	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs3780926	0.95[CHB][hapmap]
rs3781100	0.85[ASN][1000 genomes]
rs3824593	0.95[CHB][hapmap];0.84[JPT][hapmap]
rs3824691	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3904244	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3932559	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs4747581	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4747588	0.81[CHB][hapmap]
rs4749213	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4749214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4749216	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4749225	0.82[ASN][1000 genomes]
rs6482585	0.92[ASN][1000 genomes]
rs6482596	0.96[CHB][hapmap]
rs6482600	0.96[CHB][hapmap]
rs6482601	0.95[CHB][hapmap]
rs7067696	0.96[CHB][hapmap]
rs7068375	0.95[CHB][hapmap]
rs7073381	0.83[ASN][1000 genomes]
rs7079792	0.96[CHB][hapmap]
rs7083768	0.83[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7086311	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7086553	0.95[CHB][hapmap]
rs7086820	0.86[ASN][1000 genomes]
rs7087082	0.91[CHB][hapmap];0.89[ASN][1000 genomes]
rs7087089	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7088171	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7091128	0.95[CHB][hapmap]
rs7091723	0.95[CHB][hapmap]
rs7097009	0.95[CHB][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs7900024	0.95[CHB][hapmap]
rs7901653	0.95[CHB][hapmap]
rs7901840	0.91[ASN][1000 genomes]
rs7902690	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7910430	0.96[CHB][hapmap]
rs7910688	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs7914630	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs7919621	0.95[CHB][hapmap];0.81[JPT][hapmap];0.92[ASN][1000 genomes]
rs882474	0.95[CHB][hapmap]
rs9299837	0.96[CHB][hapmap]
rs9651378	0.88[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs2274741	MASTL	cis	Skin Sun Exposed Lower leg	GTEx
rs2274741	MASTL	cis	Thyroid	GTEx
rs2274741	YME1L1	Cis_1M	lymphoblastoid	RTeQTL
rs2274741	MASTL	cis	Artery Tibial	GTEx

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27257600-27319000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:27278600-27309200	Weak transcription	HSMM	muscle
3	chr10:27283200-27388400	Weak transcription	Psoas Muscle	Psoas
4	chr10:27284400-27310400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr10:27284800-27308800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr10:27285000-27319200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:27285400-27312000	Weak transcription	Brain Hippocampus Middle	brain
8	chr10:27285400-27319200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr10:27286400-27310000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr10:27286400-27316600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr10:27286600-27311800	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr10:27286600-27312000	Weak transcription	Fetal Thymus	thymus
13	chr10:27287000-27308800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr10:27287000-27312000	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr10:27287000-27350600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr10:27287800-27310000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr10:27287800-27350600	Weak transcription	Aorta	Aorta
18	chr10:27288400-27329400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr10:27288600-27312000	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr10:27288600-27312000	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr10:27288800-27357000	Weak transcription	Gastric	stomach
22	chr10:27289200-27361200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr10:27289600-27309800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr10:27289600-27310000	Weak transcription	HSMMtube	muscle
25	chr10:27289600-27312400	Weak transcription	Brain Substantia Nigra	brain
26	chr10:27289600-27314200	Weak transcription	Spleen	Spleen
27	chr10:27289600-27318800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr10:27289600-27360800	Weak transcription	Hela-S3	cervix
29	chr10:27289800-27360800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr10:27290200-27351400	Weak transcription	Thymus	Thymus
31	chr10:27290200-27361400	Weak transcription	Placenta	Placenta
32	chr10:27290400-27309600	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr10:27290600-27310000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr10:27290600-27314800	Weak transcription	Fetal Kidney	kidney
35	chr10:27290800-27326800	Weak transcription	Osteobl	bone
36	chr10:27291000-27310200	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr10:27291000-27312200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr10:27291200-27316600	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr10:27291200-27324000	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr10:27291400-27304200	Weak transcription	Fetal Muscle Leg	muscle
41	chr10:27291400-27324000	Weak transcription	Brain Germinal Matrix	brain
42	chr10:27291400-27324200	Weak transcription	Primary hematopoietic stem cells	blood
43	chr10:27291400-27360600	Weak transcription	Lung	lung
44	chr10:27291600-27304400	Weak transcription	Fetal Muscle Trunk	muscle
45	chr10:27291600-27308800	Weak transcription	Fetal Stomach	stomach
46	chr10:27291600-27312600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr10:27291600-27314600	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr10:27291600-27316400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr10:27291600-27321200	Weak transcription	Fetal Intestine Small	intestine
50	chr10:27291600-27325200	Weak transcription	Brain Inferior Temporal Lobe	brain

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