Variant report

Variant	rs10829172
Chromosome Location	chr10:27371126-27371127
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 139 )
Associated
traits (count: 15 )

rSNPs within LD-proxies of this variant (count:138)

rs_ID	r²[population]
rs10458707	0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs10734064	0.96[ASN][1000 genomes]
rs10741126	0.83[ASN][1000 genomes]
rs10741130	0.82[EUR][1000 genomes]
rs10764663	0.86[ASN][1000 genomes]
rs10764664	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10764665	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10764667	0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10764668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10764669	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10764676	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10764678	0.86[CEU][hapmap]
rs10764683	0.88[EUR][1000 genomes]
rs10764684	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10764686	0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.95[LWK][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes]
rs10829161	0.84[ASN][1000 genomes]
rs10829162	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs10829163	0.90[CHB][hapmap];0.93[CHD][hapmap];0.81[JPT][hapmap]
rs10829166	0.86[ASN][1000 genomes]
rs10829167	0.91[CHB][hapmap];0.93[CHD][hapmap];0.80[JPT][hapmap]
rs10829173	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10829174	0.92[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10829176	0.96[CEU][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10829180	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10829181	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10829188	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10829191	0.85[CHB][hapmap]
rs10829197	0.89[EUR][1000 genomes]
rs10829200	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10829201	0.95[CEU][hapmap];0.95[CHB][hapmap];0.87[EUR][1000 genomes]
rs10829202	0.87[EUR][1000 genomes]
rs10829208	0.84[EUR][1000 genomes]
rs11015522	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11015529	0.90[ASN][1000 genomes]
rs11015530	0.87[ASN][1000 genomes]
rs11015532	0.84[ASN][1000 genomes]
rs11015549	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11015556	0.86[CHB][hapmap]
rs11015559	0.86[CHB][hapmap]
rs11015563	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11015564	0.86[CHB][hapmap]
rs11015565	0.86[CHB][hapmap]
rs11015570	0.87[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.95[LWK][hapmap];0.96[MEX][hapmap];0.94[MKK][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11015571	0.86[CHB][hapmap]
rs11015575	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11015586	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11015588	0.96[CEU][hapmap];0.95[CHB][hapmap];0.87[EUR][1000 genomes]
rs11015589	0.81[EUR][1000 genomes]
rs11015590	0.86[EUR][1000 genomes]
rs11015600	0.88[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.92[MEX][hapmap];0.98[TSI][hapmap];0.82[EUR][1000 genomes]
rs1148167	0.86[MKK][hapmap]
rs11592897	0.83[ASN][1000 genomes]
rs11597298	0.87[EUR][1000 genomes]
rs12265358	0.88[EUR][1000 genomes]
rs12572344	0.90[CHB][hapmap]
rs12766193	0.87[ASN][1000 genomes]
rs12768114	0.86[ASN][1000 genomes]
rs12784464	0.82[ASN][1000 genomes]
rs1338	0.86[EUR][1000 genomes]
rs1360007	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1411283	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.83[ASN][1000 genomes]
rs1557168	0.86[EUR][1000 genomes]
rs1557169	0.85[EUR][1000 genomes]
rs1557170	0.86[EUR][1000 genomes]
rs1963735	0.83[ASN][1000 genomes]
rs1981296	0.92[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2026120	0.82[ASN][1000 genomes]
rs2183334	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2185808	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2274634	0.86[CHB][hapmap];0.95[CHD][hapmap]
rs2274635	0.86[CHB][hapmap];0.95[CHD][hapmap]
rs2274741	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs2297145	0.86[CHB][hapmap];1.00[CHD][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs2297147	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2368217	0.86[CHB][hapmap]
rs2887190	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3737055	0.92[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3758403	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3780920	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3780921	0.86[CHB][hapmap]
rs3780922	0.86[CHB][hapmap];0.95[CHD][hapmap]
rs3780926	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap];0.95[LWK][hapmap];0.96[MEX][hapmap];0.92[MKK][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3781100	0.90[ASN][1000 genomes]
rs3824593	0.95[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3904244	0.91[CHB][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs3932559	0.86[CHB][hapmap]
rs4018760	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4142123	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4481929	0.93[ASN][1000 genomes]
rs4747585	0.83[ASN][1000 genomes]
rs4749213	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs4749225	0.87[ASN][1000 genomes]
rs55741077	0.83[ASN][1000 genomes]
rs6482585	0.83[ASN][1000 genomes]
rs6482596	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6482600	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6482601	0.95[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.81[TSI][hapmap];0.84[ASN][1000 genomes]
rs7067696	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7068375	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap];0.98[TSI][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7069942	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7070117	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7073381	0.88[ASN][1000 genomes]
rs7079282	0.82[EUR][1000 genomes]
rs7079792	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7079885	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7083768	0.86[CHB][hapmap];0.81[JPT][hapmap];0.92[ASN][1000 genomes]
rs7086311	0.86[CHB][hapmap];1.00[CHD][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs7086553	0.92[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.98[TSI][hapmap];0.83[EUR][1000 genomes]
rs7086820	0.88[ASN][1000 genomes]
rs7087082	0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.86[ASN][1000 genomes]
rs7088171	0.91[CHB][hapmap]
rs7091128	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.98[TSI][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7091723	0.96[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7091830	0.84[JPT][hapmap]
rs7097009	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.86[ASN][1000 genomes]
rs7477806	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7894187	0.80[ASN][1000 genomes]
rs7897241	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7900024	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7901653	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap];0.95[LWK][hapmap];0.92[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7901840	0.84[ASN][1000 genomes]
rs7901976	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7902690	0.88[ASN][1000 genomes]
rs7909135	0.88[CEU][hapmap]
rs7909684	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7910367	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7910430	0.92[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7910688	0.86[CHB][hapmap];0.95[CHD][hapmap]
rs7914630	0.85[CHB][hapmap]
rs7918395	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7919621	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7922972	0.87[CEU][hapmap]
rs7924231	0.84[EUR][1000 genomes]
rs882474	0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];0.98[TSI][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs882475	0.88[CEU][hapmap]
rs9299837	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9651378	0.86[CHB][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs9971335	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894979	chr10:27325119-27375411	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:15)

SNP	Gene	Cis/trans	Tissue	Source
rs10829172	MASTL	cis	Artery Tibial	GTEx
rs10829172	ANKRD26	cis	parietal	SCAN
rs10829172	MASTL	cis	Nerve Tibial	GTEx
rs10829172	RAB18	cis	parietal	SCAN
rs10829172	MASTL	cis	Adipose Subcutaneous	GTEx
rs10829172	MASTL	cis	lung	GTEx
rs10829172	ACBD5	cis	cerebellum	SCAN
rs10829172	MASTL	cis	Esophagus Muscularis	GTEx
rs10829172	MASTL	cis	lymphoblastoid	seeQTL
rs10829172	MASTL	cis	Skin Sun Exposed Lower leg	GTEx
rs10829172	MASTL	cis	cerebellum	SCAN
rs10829172	MASTL	cis	Whole Blood	GTEx
rs10829172	MASTL	cis	Muscle Skeletal	GTEx
rs10829172	YME1L1	Cis_1M	lymphoblastoid	RTeQTL
rs10829172	MASTL	cis	Thyroid	GTEx

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27283200-27388400	Weak transcription	Psoas Muscle	Psoas
2	chr10:27291600-27388000	Weak transcription	Small Intestine	intestine
3	chr10:27313200-27388200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr10:27313200-27388600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr10:27313400-27388400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr10:27314600-27388800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:27323400-27388600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr10:27326800-27388200	Weak transcription	Brain Substantia Nigra	brain
9	chr10:27328000-27388200	Weak transcription	K562	blood
10	chr10:27330200-27381400	Weak transcription	HSMMtube	muscle
11	chr10:27333000-27384600	Weak transcription	Fetal Heart	heart
12	chr10:27341400-27376600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr10:27350200-27387800	Weak transcription	HMEC	breast
14	chr10:27358600-27388400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr10:27360400-27378800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr10:27360400-27383800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:27360400-27384800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:27360600-27371600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr10:27360600-27372000	Strong transcription	Adipose Nuclei	Adipose
20	chr10:27360600-27384600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr10:27361600-27388200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr10:27362200-27373400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr10:27362200-27388400	Weak transcription	Colonic Mucosa	Colon
24	chr10:27362400-27371200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr10:27362400-27376200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr10:27362400-27377200	Weak transcription	Hela-S3	cervix
27	chr10:27362400-27388000	Weak transcription	Right Ventricle	heart
28	chr10:27362400-27388200	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr10:27362400-27388400	Weak transcription	Pancreas	Pancrea
30	chr10:27362600-27373200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr10:27362600-27376600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr10:27362600-27376600	Weak transcription	Ovary	ovary
33	chr10:27362600-27376600	Weak transcription	Thymus	Thymus
34	chr10:27362600-27376800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr10:27362600-27377600	Weak transcription	Rectal Smooth Muscle	rectum
36	chr10:27362600-27377800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr10:27362600-27388400	Weak transcription	Esophagus	oesophagus
38	chr10:27362600-27388400	Weak transcription	Spleen	Spleen
39	chr10:27362600-27388800	Weak transcription	Gastric	stomach
40	chr10:27362800-27374200	Weak transcription	Brain Hippocampus Middle	brain
41	chr10:27362800-27382200	Weak transcription	Brain Angular Gyrus	brain
42	chr10:27362800-27388600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr10:27363000-27378000	Weak transcription	Fetal Brain Male	brain
44	chr10:27363600-27377200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr10:27364800-27377200	Weak transcription	Colon Smooth Muscle	Colon
46	chr10:27365000-27388000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr10:27365400-27374800	Strong transcription	Fetal Brain Female	brain
48	chr10:27365400-27374800	Strong transcription	Fetal Intestine Large	intestine
49	chr10:27365600-27372800	Strong transcription	Osteobl	bone
50	chr10:27365600-27374800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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