Variant report

Variant	rs10829188
Chromosome Location	chr10:27406854-27406855
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27406142..27408031-chr10:27433375..27436019,2	K562	blood:
2	chr10:27406725..27410410-chr10:27410998..27413611,3	K562	blood:

Extended variants
information (count: 135 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:135)

rs_ID	r²[population]
rs10734064	0.86[ASN][1000 genomes]
rs10741130	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10764664	0.83[ASN][1000 genomes]
rs10764665	0.83[ASN][1000 genomes]
rs10764667	0.84[ASN][1000 genomes]
rs10764668	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10764669	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10764673	0.90[ASN][1000 genomes]
rs10764675	0.91[ASN][1000 genomes]
rs10764676	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10764680	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10764683	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10764684	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10764686	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10829172	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10829173	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10829174	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10829176	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10829180	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10829181	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10829185	0.88[ASN][1000 genomes]
rs10829191	0.91[ASN][1000 genomes]
rs10829192	0.91[ASN][1000 genomes]
rs10829193	0.91[ASN][1000 genomes]
rs10829197	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10829200	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10829201	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10829202	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10829208	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11015522	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11015529	0.80[ASN][1000 genomes]
rs11015530	0.83[ASN][1000 genomes]
rs11015532	0.86[ASN][1000 genomes]
rs11015538	0.91[ASN][1000 genomes]
rs11015542	0.91[ASN][1000 genomes]
rs11015548	0.91[ASN][1000 genomes]
rs11015549	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11015554	0.91[ASN][1000 genomes]
rs11015555	0.91[ASN][1000 genomes]
rs11015556	0.91[ASN][1000 genomes]
rs11015558	0.91[ASN][1000 genomes]
rs11015559	0.91[ASN][1000 genomes]
rs11015560	0.91[ASN][1000 genomes]
rs11015563	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11015564	0.91[ASN][1000 genomes]
rs11015565	0.91[ASN][1000 genomes]
rs11015566	0.91[ASN][1000 genomes]
rs11015570	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11015571	0.90[ASN][1000 genomes]
rs11015575	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11015586	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11015588	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11015589	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11015590	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11015600	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11597298	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11813670	0.91[ASN][1000 genomes]
rs12265358	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12571792	0.91[ASN][1000 genomes]
rs12572344	0.91[ASN][1000 genomes]
rs12762457	0.83[ASN][1000 genomes]
rs12766193	0.83[ASN][1000 genomes]
rs12768114	0.82[ASN][1000 genomes]
rs12769335	0.91[ASN][1000 genomes]
rs12784464	0.86[ASN][1000 genomes]
rs1338	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1360007	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1557168	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1557169	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1557170	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1981296	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2185808	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2274634	0.91[ASN][1000 genomes]
rs2274635	0.90[ASN][1000 genomes]
rs2274743	0.91[ASN][1000 genomes]
rs2297143	0.90[ASN][1000 genomes]
rs2297145	0.80[ASN][1000 genomes]
rs2297147	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2297151	0.91[ASN][1000 genomes]
rs2297152	0.90[ASN][1000 genomes]
rs2368217	0.91[ASN][1000 genomes]
rs2887190	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35805599	0.81[EUR][1000 genomes]
rs3737055	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3758403	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3780920	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3780921	0.91[ASN][1000 genomes]
rs3780922	0.91[ASN][1000 genomes]
rs3780926	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3824593	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3932559	0.91[ASN][1000 genomes]
rs4018760	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4142123	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4481929	0.83[ASN][1000 genomes]
rs4747585	0.87[ASN][1000 genomes]
rs4749226	0.91[ASN][1000 genomes]
rs4749240	0.81[ASN][1000 genomes]
rs55741077	0.87[ASN][1000 genomes]
rs61849039	0.81[ASN][1000 genomes]
rs6482596	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6482600	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6482601	0.96[ASN][1000 genomes]
rs67425403	0.91[ASN][1000 genomes]
rs7067696	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7068375	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7069942	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7070117	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7073381	0.82[ASN][1000 genomes]
rs7079282	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7079792	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7079885	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7086311	0.83[ASN][1000 genomes]
rs7086553	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7091128	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7091723	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7477806	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7894187	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7896012	0.91[ASN][1000 genomes]
rs7897241	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7900024	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7901653	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7901976	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7909684	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7910367	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7910430	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7910688	0.91[ASN][1000 genomes]
rs7914630	0.91[ASN][1000 genomes]
rs7918395	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7919523	0.83[ASN][1000 genomes]
rs7921980	0.91[ASN][1000 genomes]
rs7924231	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs882474	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9299837	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9971193	0.91[ASN][1000 genomes]
rs9971335	0.84[ASN][1000 genomes]

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs10829188	MASTL	cis	Whole Blood	GTEx
rs10829188	MASTL	cis	lung	GTEx
rs10829188	MASTL	cis	Muscle Skeletal	GTEx
rs10829188	ARMC4P1	cis	Esophagus Muscularis	GTEx
rs10829188	YME1L1	Cis_1M	lymphoblastoid	RTeQTL
rs10829188	MASTL	cis	Skin Sun Exposed Lower leg	GTEx
rs10829188	MASTL	cis	Esophagus Muscularis	GTEx
rs10829188	MASTL	cis	Nerve Tibial	GTEx
rs10829188	MASTL	cis	Thyroid	GTEx
rs10829188	MASTL	cis	Artery Tibial	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27389800-27441200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:27390000-27408000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr10:27390000-27442000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:27390200-27435000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr10:27390400-27417600	Weak transcription	Stomach Mucosa	stomach
6	chr10:27393800-27438600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr10:27394000-27426600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr10:27394200-27432600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:27394800-27432800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:27395400-27437800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:27396200-27412800	Strong transcription	Duodenum Smooth Muscle	Duodenum
12	chr10:27396200-27425400	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr10:27396200-27440600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr10:27396400-27418400	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr10:27396600-27425400	Strong transcription	Fetal Muscle Trunk	muscle
16	chr10:27396800-27411800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr10:27396800-27432000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:27397000-27412600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr10:27397000-27425600	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr10:27397600-27438600	Strong transcription	Fetal Thymus	thymus
21	chr10:27398200-27434200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr10:27398400-27428400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr10:27398400-27435200	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr10:27398600-27418800	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr10:27398600-27422000	Strong transcription	Rectal Mucosa Donor 31	rectum
26	chr10:27398600-27425000	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr10:27398600-27425200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr10:27398600-27425200	Strong transcription	Fetal Intestine Large	intestine
29	chr10:27398600-27425400	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr10:27398600-27426400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
31	chr10:27398600-27427000	Strong transcription	GM12878-XiMat	blood
32	chr10:27398600-27427800	Strong transcription	Adipose Nuclei	Adipose
33	chr10:27398600-27431600	Strong transcription	HUES48 Cell Line	embryonic stem cell
34	chr10:27398600-27434800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr10:27398600-27434800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr10:27398600-27434800	Strong transcription	Primary T helper cells PMA-I stimulated	--
37	chr10:27398600-27436400	Strong transcription	Dnd41	blood
38	chr10:27398800-27425400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr10:27398800-27426000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr10:27398800-27427600	Strong transcription	Fetal Lung	lung
41	chr10:27398800-27438200	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr10:27398800-27438200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr10:27399000-27412800	Strong transcription	Stomach Smooth Muscle	stomach
44	chr10:27399000-27415400	Strong transcription	H1 Cell Line	embryonic stem cell
45	chr10:27399000-27426400	Strong transcription	Osteobl	bone
46	chr10:27399000-27426800	Strong transcription	Primary B cells from peripheral blood	blood
47	chr10:27399000-27431400	Strong transcription	Placenta	Placenta
48	chr10:27399200-27412200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr10:27399200-27424800	Strong transcription	Cortex derived primary cultured neurospheres	brain
50	chr10:27399200-27425400	Strong transcription	Duodenum Mucosa	Duodenum

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