Variant report

Variant	rs10829153
Chromosome Location	chr10:27277310-27277311
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27276414..27278401-chr10:27289394..27292379,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10458707	0.94[JPT][hapmap]
rs10741124	0.83[ASN][1000 genomes]
rs10741126	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10764663	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10764664	0.95[JPT][hapmap];0.87[YRI][hapmap]
rs10764665	0.95[JPT][hapmap];0.87[YRI][hapmap]
rs10764667	0.92[ASW][hapmap];0.82[CHD][hapmap];0.95[JPT][hapmap];0.80[LWK][hapmap];0.84[TSI][hapmap];0.87[YRI][hapmap]
rs10764669	0.95[JPT][hapmap]
rs10829152	0.85[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10829154	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10829161	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10829163	0.84[CHD][hapmap]
rs10829166	0.82[AMR][1000 genomes]
rs10829167	0.84[CHD][hapmap]
rs10829172	0.82[CHD][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap]
rs10829173	0.94[JPT][hapmap]
rs10829174	0.82[CHD][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap]
rs11015440	0.91[ASN][1000 genomes]
rs11015522	0.95[JPT][hapmap]
rs11015570	0.90[JPT][hapmap];0.83[MEX][hapmap]
rs11592897	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1411283	0.92[ASW][hapmap];0.84[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.91[TSI][hapmap];0.87[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1981296	0.89[JPT][hapmap]
rs2026120	0.82[AMR][1000 genomes]
rs2183334	0.95[JPT][hapmap];0.87[YRI][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2297145	0.82[CHD][hapmap]
rs3737055	0.82[CHD][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap]
rs3780920	0.90[JPT][hapmap]
rs3780926	0.90[JPT][hapmap];0.83[MEX][hapmap]
rs3824593	0.88[JPT][hapmap]
rs4253976	0.94[ASN][1000 genomes]
rs6482585	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6482596	0.90[JPT][hapmap]
rs6482600	0.90[JPT][hapmap]
rs6482601	0.90[JPT][hapmap]
rs7067696	0.90[JPT][hapmap]
rs7068375	0.90[JPT][hapmap]
rs7079792	0.90[JPT][hapmap]
rs7086311	0.82[CHD][hapmap]
rs7087082	0.84[ASW][hapmap];0.84[CHD][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.82[MKK][hapmap];0.84[TSI][hapmap];0.87[YRI][hapmap];0.82[AMR][1000 genomes]
rs7091128	0.90[JPT][hapmap]
rs7091723	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs7097009	0.92[ASW][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.84[TSI][hapmap];0.81[YRI][hapmap]
rs7900024	0.90[JPT][hapmap]
rs7901653	0.90[JPT][hapmap];0.87[MEX][hapmap]
rs7901840	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7906430	0.83[ASN][1000 genomes]
rs7910430	0.90[JPT][hapmap]
rs7911508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7919621	0.92[ASW][hapmap];0.84[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.82[MKK][hapmap];0.91[TSI][hapmap];0.87[YRI][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9299837	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3365642	chr10:27274319-27283413	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs10829153	ACBD5	cis	cerebellum	SCAN
rs10829153	MASTL	cis	Nerve Tibial	GTEx
rs10829153	MASTL	cis	lymphoblastoid	seeQTL
rs10829153	ANKRD26	cis	parietal	SCAN
rs10829153	ANKRD26	cis	cerebellum	SCAN
rs10829153	MASTL	cis	cerebellum	SCAN
rs10829153	MASTL	cis	Muscle Skeletal	GTEx

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27243000-27294800	Weak transcription	Liver	Liver
2	chr10:27251600-27290000	Weak transcription	Fetal Intestine Large	intestine
3	chr10:27253400-27286400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr10:27255400-27286800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr10:27255600-27282600	Weak transcription	Brain Anterior Caudate	brain
6	chr10:27257600-27319000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr10:27258200-27291200	Weak transcription	Left Ventricle	heart
8	chr10:27258400-27290000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr10:27269000-27293400	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr10:27270400-27291000	Weak transcription	Adipose Nuclei	Adipose
11	chr10:27273200-27290000	Weak transcription	Primary T cells from cord blood	blood
12	chr10:27277000-27284000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:27277000-27291000	Weak transcription	Sigmoid Colon	Sigmoid Colon

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