Variant report

Variant	rs10829152
Chromosome Location	chr10:27266501-27266502
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANKRD26-1	chr10:27265672-27266794	NONHSAT011876

Extended variants
information (count: 38 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10458707	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs10741124	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10764664	0.81[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap]
rs10764665	0.81[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap]
rs10764667	0.81[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap]
rs10764669	0.80[CHB][hapmap];0.95[JPT][hapmap]
rs10829153	0.85[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10829154	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10829172	0.95[JPT][hapmap]
rs10829173	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs10829174	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs11015440	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015522	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs11015570	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs1411283	0.81[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap]
rs1981296	0.89[JPT][hapmap]
rs2183334	0.81[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap]
rs3737055	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs3780920	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs3780926	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs3824593	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs4253976	0.87[ASN][1000 genomes]
rs6482596	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs6482600	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs6482601	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs7067696	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs7068375	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs7087082	0.81[CHB][hapmap];0.94[JPT][hapmap];0.87[YRI][hapmap]
rs7091128	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs7091723	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs7097009	0.81[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap]
rs7900024	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs7901653	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs7906430	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7910430	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs7911508	0.85[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7919621	0.81[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap]
rs9299837	0.81[CHB][hapmap];0.90[JPT][hapmap]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs10829152	SVIL	cis	cerebellum	SCAN
rs10829152	ANKRD26	cis	cerebellum	SCAN
rs10829152	MASTL	cis	cerebellum	SCAN
rs10829152	MASTL	cis	multi-tissue	Pritchard
rs10829152	MASTL	cis	lymphoblastoid	seeQTL

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27243000-27294800	Weak transcription	Liver	Liver
2	chr10:27244800-27271800	Weak transcription	Pancreas	Pancrea
3	chr10:27245600-27267800	Weak transcription	Fetal Intestine Small	intestine
4	chr10:27245600-27270200	Weak transcription	Ovary	ovary
5	chr10:27246000-27269200	Weak transcription	Adipose Nuclei	Adipose
6	chr10:27246600-27273000	Weak transcription	Fetal Stomach	stomach
7	chr10:27247600-27269200	Weak transcription	Spleen	Spleen
8	chr10:27247800-27269200	Weak transcription	Lung	lung
9	chr10:27249600-27268600	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr10:27249800-27271400	Weak transcription	Right Ventricle	heart
11	chr10:27251600-27290000	Weak transcription	Fetal Intestine Large	intestine
12	chr10:27253400-27286400	Weak transcription	Primary hematopoietic stem cells	blood
13	chr10:27253600-27269000	Weak transcription	Primary T cells from cord blood	blood
14	chr10:27254000-27271600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr10:27255400-27286800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr10:27255600-27282600	Weak transcription	Brain Anterior Caudate	brain
17	chr10:27257600-27319000	Weak transcription	Stomach Smooth Muscle	stomach
18	chr10:27258200-27291200	Weak transcription	Left Ventricle	heart
19	chr10:27258400-27290000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr10:27258600-27269800	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr10:27258600-27272800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr10:27264000-27271200	Weak transcription	Aorta	Aorta
23	chr10:27265600-27269000	Strong transcription	Skeletal Muscle Female	skeletal muscle
24	chr10:27266400-27267000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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