Variant report

Variant	rs10829154
Chromosome Location	chr10:27282887-27282888
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10458707	0.94[JPT][hapmap]
rs10741124	0.83[ASN][1000 genomes]
rs10741126	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10764663	0.86[AMR][1000 genomes]
rs10764664	0.95[JPT][hapmap];0.82[YRI][hapmap]
rs10764665	0.95[JPT][hapmap];0.82[YRI][hapmap]
rs10764667	0.95[JPT][hapmap];0.81[YRI][hapmap]
rs10764669	0.95[JPT][hapmap]
rs10829152	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10829153	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10829161	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10829172	0.95[JPT][hapmap]
rs10829173	0.95[JPT][hapmap]
rs10829174	0.95[JPT][hapmap]
rs11015440	0.91[ASN][1000 genomes]
rs11015522	0.95[JPT][hapmap]
rs11015570	0.90[JPT][hapmap]
rs11592897	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1411283	0.95[JPT][hapmap];0.81[YRI][hapmap];0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1981296	0.89[JPT][hapmap]
rs2183334	0.95[JPT][hapmap];0.82[YRI][hapmap];0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs3737055	0.95[JPT][hapmap]
rs3780920	0.90[JPT][hapmap]
rs3780926	0.90[JPT][hapmap]
rs3824593	0.89[JPT][hapmap]
rs4253976	0.94[ASN][1000 genomes]
rs6482585	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6482596	0.90[JPT][hapmap]
rs6482600	0.90[JPT][hapmap]
rs6482601	0.90[JPT][hapmap]
rs7067696	0.90[JPT][hapmap]
rs7068375	0.90[JPT][hapmap]
rs7079792	0.90[JPT][hapmap]
rs7087082	0.94[JPT][hapmap];0.81[YRI][hapmap]
rs7091128	0.90[JPT][hapmap]
rs7091723	0.80[CHB][hapmap];0.84[JPT][hapmap]
rs7097009	0.95[JPT][hapmap]
rs7900024	0.90[JPT][hapmap]
rs7901653	0.90[JPT][hapmap]
rs7901840	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7906430	0.83[ASN][1000 genomes]
rs7910430	0.90[JPT][hapmap]
rs7911508	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7919621	0.95[JPT][hapmap];0.81[YRI][hapmap];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs882474	0.90[JPT][hapmap]
rs9299837	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3365642	chr10:27274319-27283413	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10829154	MASTL	cis	Muscle Skeletal	GTEx

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27243000-27294800	Weak transcription	Liver	Liver
2	chr10:27251600-27290000	Weak transcription	Fetal Intestine Large	intestine
3	chr10:27253400-27286400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr10:27255400-27286800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr10:27257600-27319000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr10:27258200-27291200	Weak transcription	Left Ventricle	heart
7	chr10:27258400-27290000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr10:27269000-27293400	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr10:27270400-27291000	Weak transcription	Adipose Nuclei	Adipose
10	chr10:27273200-27290000	Weak transcription	Primary T cells from cord blood	blood
11	chr10:27277000-27284000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:27277000-27291000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr10:27277800-27290200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr10:27278600-27309200	Weak transcription	HSMM	muscle
15	chr10:27278800-27286600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr10:27279800-27286200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr10:27280600-27295000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr10:27280800-27290800	Weak transcription	Ovary	ovary
19	chr10:27281400-27286200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr10:27282600-27283000	Strong transcription	Brain Anterior Caudate	brain
21	chr10:27282600-27283200	Strong transcription	Psoas Muscle	Psoas
22	chr10:27282600-27286600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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